View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15938_high_10 (Length: 429)
Name: NF15938_high_10
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15938_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 9 - 413
Target Start/End: Original strand, 44563374 - 44563778
Alignment:
| Q |
9 |
gattattctgtcgtagattggtaaccatatcgttaggcttaacatcgtgaagatcgtgtaagaagctgcagggattttgaaatttgtgttgaaaaaggtt |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44563374 |
gatttttctgtcgtagattggtaaccatatcgttaggcttaacatcgtgaagatcgtgtaagaagctgcagggattttgaaatttgtgttgaaaaaggtt |
44563473 |
T |
|
| Q |
109 |
cggtcggattgaattgcttggaagactaacactgtgttttgttggattattgcaacgtagtagagtatgcctgaaacccaaattggtagaactcttacta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44563474 |
cggtcggattgaattgcttggaagactaacactgtgttttgttggattattgcaacgtagtagagtatgcctgaaacccaaattggtagaactcttacta |
44563573 |
T |
|
| Q |
209 |
agcatttcacttcttccacttgttgtatactgcatagattccatggatcagatgcagaaccatcagggtttattttgtcttgttgggttataatagcagc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44563574 |
agcatttcacttcttccacttgttgtatactgcatagattccatggatcagatgcagaaccatcagggtttattttgtcttgttgggttataatagcagc |
44563673 |
T |
|
| Q |
309 |
tttgtcaaggaacctgttaattcatacgaatattttagaactaacccattctatgaataaatcagcaaagggtaagattgcatttgcaaaagtaaagtta |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44563674 |
tttgtcaaggaacctgttaattcatacgaatattttagaactaacccattctatgaataaatcagcaaagggtaagattgcatttgaaaaagtaaagtta |
44563773 |
T |
|
| Q |
409 |
aggag |
413 |
Q |
| |
|
||||| |
|
|
| T |
44563774 |
aggag |
44563778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 179 - 314
Target Start/End: Original strand, 44542175 - 44542310
Alignment:
| Q |
179 |
ctgaaacccaaattggtagaactcttactaagcatttcacttcttccacttgttgtatactgcatagattccatggatcagatgcagaaccatcagggtt |
278 |
Q |
| |
|
|||||| ||| || |||| |||||| || || ||||||| ||||||||||||||||| ||||| ||| |||||||||||| ||| |||||||| || || |
|
|
| T |
44542175 |
ctgaaaaccatataggtaaaactctcaccaaacatttcaactcttccacttgttgtatgctgcaaagactccatggatcagctgctgaaccatctggatt |
44542274 |
T |
|
| Q |
279 |
tattttgtcttgttgggttataatagcagctttgtc |
314 |
Q |
| |
|
||||||||||||| ||||| || ||||||||||| |
|
|
| T |
44542275 |
tattttgtcttgtgatgttatcattgcagctttgtc |
44542310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 325
Target Start/End: Original strand, 44553498 - 44553644
Alignment:
| Q |
179 |
ctgaaacccaaattggtagaactcttactaagcatttcacttcttccacttgttgtatactgcatagattccatggatcagatgcagaaccatcagggtt |
278 |
Q |
| |
|
|||||||||| || |||| ||||| | |||||||| || ||||||||||| || | |||||||||||||||||||||||| ||||| || | || || |
|
|
| T |
44553498 |
ctgaaacccatatgggtaacactctcaacaagcatttgacctcttccacttgctgcaaactgcatagattccatggatcagaagcagatccgttgggatt |
44553597 |
T |
|
| Q |
279 |
tattttgtcttgttgggttataatagcagctttgtcaaggaacctgt |
325 |
Q |
| |
|
||||| |||||| |||| || || || ||||||||||| ||||||| |
|
|
| T |
44553598 |
tatttgatcttgtggggtcatgattgctgctttgtcaagaaacctgt |
44553644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University