View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15938_high_12 (Length: 393)
Name: NF15938_high_12
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15938_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 109 - 375
Target Start/End: Complemental strand, 44975391 - 44975125
Alignment:
| Q |
109 |
ttgattcttgttctttgatcgatgattaaatttcctccatcaaaattgattttcacatatttggttgttgtctagtagaattgattccgacttgaagcta |
208 |
Q |
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| T |
44975391 |
ttgattcttgttctttgatcgatgattaaatttcctccatcaaaattgattttcacatatttggttgttgtctagtagaattgattccgacttgaagcta |
44975292 |
T |
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| Q |
209 |
gaatgacattgattttaacgcgaatattctannnnnnncttcagtgttttcagttaatttgatggataccattaatcaaggtgctgaactgaatatggat |
308 |
Q |
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| T |
44975291 |
gaatgacattgattttaacgcgaatattctatttttttcttcagtgttttcagttaatttgatggataccattaatcaaggtgctgaactgaatatggat |
44975192 |
T |
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| Q |
309 |
cctagtgattggagaggtcaatttccagctgaatcacgccaaagaattgtcaacaaaatgtaaacat |
375 |
Q |
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| T |
44975191 |
cctagtgattggagaggtcaatttccagctgaatcacgccaaagaattgtcaacaaaatgtaaacat |
44975125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 281 - 371
Target Start/End: Original strand, 40910520 - 40910610
Alignment:
| Q |
281 |
taatcaaggtgctgaactgaatatggatcctagtgattggagaggtcaatttccagctgaatcacgccaaagaattgtcaacaaaatgtaa |
371 |
Q |
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| T |
40910520 |
taatcaaggtgctgaaccgaatatggatactagtgattggagaggtcaattgcagcctgaatcacgccaaagaattgtcaacaaaatgtaa |
40910610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 281 - 371
Target Start/End: Complemental strand, 44969469 - 44969379
Alignment:
| Q |
281 |
taatcaaggtgctgaactgaatatggatcctagtgattggagaggtcaatttccagctgaatcacgccaaagaattgtcaacaaaatgtaa |
371 |
Q |
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| T |
44969469 |
taatcaaggtgctgaaccgaatatggatactagtgattggagaggtcaattgcagcctgaatcacgccaaagaattgtcaacaaaatgtaa |
44969379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 281 - 371
Target Start/End: Complemental strand, 44983792 - 44983702
Alignment:
| Q |
281 |
taatcaaggtgctgaactgaatatggatcctagtgattggagaggtcaatttccagctgaatcacgccaaagaattgtcaacaaaatgtaa |
371 |
Q |
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| T |
44983792 |
taatcaaggtgctgaaccgaatatggatactagtgattggagaggtcaattgcagcctgaatcacgccaaagaattgtcaacaaaatgtaa |
44983702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 44975540 - 44975455
Alignment:
| Q |
1 |
aggttccattactctctcttcgtttcgtgttccttcagnnnnnnnggatgattaaatctcctctttcattttcagcttagttttgg |
86 |
Q |
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| T |
44975540 |
aggttccattactctctcttcgtttcgtgttccttcagtttttttggatgattaaatctcctctttcattttcagtttagttttgg |
44975455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 300 - 371
Target Start/End: Complemental strand, 44999618 - 44999547
Alignment:
| Q |
300 |
aatatggatcctagtgattggagaggtcaatttccagctgaatcacgccaaagaattgtcaacaaaatgtaa |
371 |
Q |
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| T |
44999618 |
aatatcgatactagtgattggagaggtcaatttccgcctgaatcacgtcaaagaattgtcaacaaaatgtaa |
44999547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 33541977 - 33541936
Alignment:
| Q |
153 |
attgattttcacatatttggttgttgtctagtagaattgatt |
194 |
Q |
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| T |
33541977 |
attgattttgacatatttggttgttttctagtagaattgatt |
33541936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 463256 - 463211
Alignment:
| Q |
149 |
caaaattgattttcacatatttggttgttgtctagtagaattgatt |
194 |
Q |
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| T |
463256 |
caaaattgattctaatatgtttggttgttgtctagtagaattgatt |
463211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 21356810 - 21356854
Alignment:
| Q |
150 |
aaaattgattttcacatatttggttgttgtctagtagaattgatt |
194 |
Q |
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| T |
21356810 |
aaaattaattttgacatatttggttgttgtcaagtaaaattgatt |
21356854 |
T |
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