View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15938_high_13 (Length: 387)
Name: NF15938_high_13
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15938_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 15 - 368
Target Start/End: Original strand, 40579314 - 40579667
Alignment:
| Q |
15 |
taggccaaggtggtcagggaattgtttacaaaggagttttacaagataacagaattgtagcaataaaaaagtccaaaataagtgacccgaaccagattga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40579314 |
taggccaaggtggtcagggaattgtttacaaaggagttttacaagataacagaattgtagcaataaaaaagtccaaaataagtgacccgaaccagattga |
40579413 |
T |
|
| Q |
115 |
gtcgttcatcaatgaagtggtcattctttcccaaatcaatcatagaaatgtggtaaagattttgggttgttgtttagagacagaagttccgttacttgtt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40579414 |
gtcgttcatcaatgaagtggtcattctttcccaaatcaatcatagaaatgtggtaaagattttgggttgttgtttagagacagaagttccgttacttgtt |
40579513 |
T |
|
| Q |
215 |
tacgaatttattcccaatggtactgtttatgagcatattcatgatgaaacccaatctatgaagcttacatggaaaacaagattgagaatagcaaaggaag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40579514 |
tacgaatttattcccaatggtactgtttatgagcatcttcatgatgaaacccaatctatgaagcttacatggaaaacaagattaagaatagcaaaggaag |
40579613 |
T |
|
| Q |
315 |
ctgctggtgtgctggcatatttacactctgctgcttctacaccaatcatacata |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40579614 |
ctgctggtgtgctggcatatttacactctgctgcttctacaccaatcatacata |
40579667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 15 - 368
Target Start/End: Original strand, 40572857 - 40573210
Alignment:
| Q |
15 |
taggccaaggtggtcagggaattgtttacaaaggagttttacaagataacagaattgtagcaataaaaaagtccaaaataagtgacccgaaccagattga |
114 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40572857 |
taggccaaggtggtcaaggaattgtttacaaaggagttttacaaaataacagaattgtagcaataaaaaagtccaaaataagtgacccgaaccaggttga |
40572956 |
T |
|
| Q |
115 |
gtcgttcatcaatgaagtggtcattctttcccaaatcaatcatagaaatgtggtaaagattttgggttgttgtttagagacagaagttccgttacttgtt |
214 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||| |
|
|
| T |
40572957 |
gtcgttcatcaatgaagtggtcgtactttcccaaatcaaccatagaaatgtggtaaagatcttgggctgttgtttagagacagaagttcccttagttgtg |
40573056 |
T |
|
| Q |
215 |
tacgaatttattcccaatggtactgtttatgagcatattcatgatgaaacccaatctatgaagcttacatggaaaacaagattgagaatagcaaaggaag |
314 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||| || ||||| |||| ||| |
|
|
| T |
40573057 |
tatgaatttattcccaatggtactgtttatgagcatcttcatgacgaaacccaatctataaagcttacatggaaaacaaggttaagaatttcaaaagaaa |
40573156 |
T |
|
| Q |
315 |
ctgctggtgtgctggcatatttacactctgctgcttctacaccaatcatacata |
368 |
Q |
| |
|
|| ||||| |||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
40573157 |
tagccggtgtcctggcatacttacactctgctgcttcgacaccaatcatacata |
40573210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 368
Target Start/End: Original strand, 40568256 - 40568609
Alignment:
| Q |
15 |
taggccaaggtggtcagggaattgtttacaaaggagttttacaagataacagaattgtagcaataaaaaagtccaaaataagtgacccgaaccagattga |
114 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| ||||||||||| |
|
|
| T |
40568256 |
taggccaaggtggtcagggaactgtttacaaaggagttttacaaaataaaagaattgtagcaataaaaaagtccaaagtcagtgacccaaaccagattga |
40568355 |
T |
|
| Q |
115 |
gtcgttcatcaatgaagtggtcattctttcccaaatcaatcatagaaatgtggtaaagattttgggttgttgtttagagacagaagttccgttacttgtt |
214 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
40568356 |
gccgttcatcaatgaagtggtcgttctttcccaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcccttgcttgtt |
40568455 |
T |
|
| Q |
215 |
tacgaatttattcccaatggtactgtttatgagcatattcatgatgaaacccaatctatgaagcttacatggaaaacaagattgagaatagcaaaggaag |
314 |
Q |
| |
|
|| ||||| ||| |||| || |||||||| |||||| |||||||| ||| |||| |||| || |||||||||||||| ||||| ||||||||||| ||| |
|
|
| T |
40568456 |
tatgaattcatttccaacggcactgtttacgagcatcttcatgatcaaaaccaaactataaaacttacatggaaaaccagattaagaatagcaaaagaaa |
40568555 |
T |
|
| Q |
315 |
ctgctggtgtgctggcatatttacactctgctgcttctacaccaatcatacata |
368 |
Q |
| |
|
||||||| || |||||||| ||||||||||| ||||| |||||||||||||||| |
|
|
| T |
40568556 |
ctgctggagtcctggcatacttacactctgcggcttcaacaccaatcatacata |
40568609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 368
Target Start/End: Original strand, 40597644 - 40597997
Alignment:
| Q |
15 |
taggccaaggtggtcagggaattgtttacaaaggagttttacaagataacagaattgtagcaataaaaaagtccaaaataagtgacccgaaccagattga |
114 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||||| || |||||||||||||| ||||| ||||| |||||||| ||||||||||| |
|
|
| T |
40597644 |
taggccaaggtggtcagggaacagtttacaaaggagttttagaagataaaagtattgtagcaataaagaagtcaaaaatcagtgacccaaaccagattga |
40597743 |
T |
|
| Q |
115 |
gtcgttcatcaatgaagtggtcattctttcccaaatcaatcatagaaatgtggtaaagattttgggttgttgtttagagacagaagttccgttacttgtt |
214 |
Q |
| |
|
|||||||||||||||||||| | | |||||||||||||| ||||| ||||||||||| || | |||||||||||||| ||||||||||| || |||||| |
|
|
| T |
40597744 |
gtcgttcatcaatgaagtggccgtgctttcccaaatcaaccataggaatgtggtaaaacttgtaggttgttgtttagaaacagaagttccattgcttgtt |
40597843 |
T |
|
| Q |
215 |
tacgaatttattcccaatggtactgtttatgagcatattcatgatgaaacccaatctatgaagcttacatggaaaacaagattgagaatagcaaaggaag |
314 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
40597844 |
tatgaatttattcccaatggtacagtttatgagcatattcatgaccaaaacgaatctagaaagcttacatggaaaacaagattgagaatagcaaaagaaa |
40597943 |
T |
|
| Q |
315 |
ctgctggtgtgctggcatatttacactctgctgcttctacaccaatcatacata |
368 |
Q |
| |
|
||||||| || |||||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
40597944 |
ctgctggagtcctggcatacttacattctgctgcttccacaccaatcatacata |
40597997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 368
Target Start/End: Original strand, 40601812 - 40602165
Alignment:
| Q |
15 |
taggccaaggtggtcagggaattgtttacaaaggagttttacaagataacagaattgtagcaataaaaaagtccaaaataagtgacccgaaccagattga |
114 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||| ||||||||||| |
|
|
| T |
40601812 |
taggccaaggtggtcagggaacagtttacaaaggagttttacaagataacagaattgtcgcaataaaaaagtccacaatcagtgaccaaaaccagattga |
40601911 |
T |
|
| Q |
115 |
gtcgttcatcaatgaagtggtcattctttcccaaatcaatcatagaaatgtggtaaagattttgggttgttgtttagagacagaagttccgttacttgtt |
214 |
Q |
| |
|
| ||||||||||||||||| |||||||||| |||||||| ||||||||||||||| || |||||||||| |||||||| ||||||||||| || |||||| |
|
|
| T |
40601912 |
gccgttcatcaatgaagtgatcattctttctcaaatcaaccatagaaatgtggtacagcttttgggttgctgtttagaaacagaagttccattgcttgtt |
40602011 |
T |
|
| Q |
215 |
tacgaatttattcccaatggtactgtttatgagcatattcatgatgaaacccaatctatgaagcttacatggaaaacaagattgagaatagcaaaggaag |
314 |
Q |
| |
|
|| || |||||| ||||||||||||||||||| ||| |||||||| ||| ||| ||||| |||||||||||||| |||||||| |||||||||| ||| |
|
|
| T |
40602012 |
tatgagtttatttccaatggtactgtttatgatcatcttcatgatcaaaaccagtctataaagcttacatggaacacaagattaagaatagcaacagaaa |
40602111 |
T |
|
| Q |
315 |
ctgctggtgtgctggcatatttacactctgctgcttctacaccaatcatacata |
368 |
Q |
| |
|
||||||| || ||||||| ||||| |||||||||||||| |||||||| |||| |
|
|
| T |
40602112 |
ctgctggagtcttggcatacttacattctgctgcttctactccaatcattcata |
40602165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 368
Target Start/End: Original strand, 40591162 - 40591515
Alignment:
| Q |
15 |
taggccaaggtggtcagggaattgtttacaaaggagttttacaagataacagaattgtagcaataaaaaagtccaaaataagtgacccgaaccagattga |
114 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||| | ||||| ||||||||||| |
|
|
| T |
40591162 |
taggcaaaggttctcagggaacagtttacaaaggagttttacaagataaaagtattgtagcaataaaaaagtccaaaatcaatgaccaaaaccagattga |
40591261 |
T |
|
| Q |
115 |
gtcgttcatcaatgaagtggtcattctttcccaaatcaatcatagaaatgtggtaaagattttgggttgttgtttagagacagaagttccgttacttgtt |
214 |
Q |
| |
|
| | |||||||||||||||||| ||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
40591262 |
gccattcatcaatgaagtggtcgttctttctcaaatcaaccatagaaatgtggtaagaattttgggttgttgtttagagacagaagttccattgcttgtt |
40591361 |
T |
|
| Q |
215 |
tacgaatttattcccaatggtactgtttatgagcatattcatgatgaaacccaatctatgaagcttacatggaaaacaagattgagaatagcaaaggaag |
314 |
Q |
| |
|
|| ||||| ||||||||||| |||||||| || ||| |||||||| ||| ||||||||| ||||| |||||||||||||| || ||||||||||| ||| |
|
|
| T |
40591362 |
tatgaattcattcccaatggaactgtttacgatcatcttcatgatcaaaaccaatctataaagctgacatggaaaacaaggttaagaatagcaaaagaaa |
40591461 |
T |
|
| Q |
315 |
ctgctggtgtgctggcatatttacactctgctgcttctacaccaatcatacata |
368 |
Q |
| |
|
||||||| || |||||||| ||||| |||||||||||||| |||||||| |||| |
|
|
| T |
40591462 |
ctgctggagtcctggcatacttacattctgctgcttctactccaatcattcata |
40591515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 15 - 368
Target Start/End: Complemental strand, 2015480 - 2015127
Alignment:
| Q |
15 |
taggccaaggtggtcagggaattgtttacaaaggagttttacaagataacagaattgtagcaataaaaaagtccaaaataagtgacccgaaccagattga |
114 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| || || ||||||||||| |||||||| ||||||||||| |
|
|
| T |
2015480 |
taggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctattaagaagtccaaaatcagtgaccctaaccagattga |
2015381 |
T |
|
| Q |
115 |
gtcgttcatcaatgaagtggtcattctttcccaaatcaatcatagaaatgtggtaaagattttgggttgttgtttagagacagaagttccgttacttgtt |
214 |
Q |
| |
|
| ||||||||||||||||| | | ||||| |||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2015380 |
gccgttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctttacttgtt |
2015281 |
T |
|
| Q |
215 |
tacgaatttattcccaatggtactgtttatgagcatattcatgatgaaacccaatctatgaagcttacatggaaaacaagattgagaatagcaaaggaag |
314 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||| ||| | | || | ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2015280 |
tacgaattcattcccaatggtactgtttatgagcatcttcatgatcaaaatccaactttaaagcttacatggaaaacaagattgagaatagcaaaagaaa |
2015181 |
T |
|
| Q |
315 |
ctgctggtgtgctggcatatttacactctgctgcttctacaccaatcatacata |
368 |
Q |
| |
|
||||||| || || ||||| || || |||||||| ||||||||||||||||||| |
|
|
| T |
2015180 |
ctgctggagtcctagcatacttgcattctgctgcatctacaccaatcatacata |
2015127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 11845090 - 11845189
Alignment:
| Q |
137 |
attctttcccaaatcaatcatagaaatgtggtaaagattttgggttgttgtttagagacagaagttccgttacttgtttacgaatttattcccaatggta |
236 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| ||||| || || |||||||| ||||||||| |||| || |||||||| ||||| ||||| ||||||| |
|
|
| T |
11845090 |
attctttcacaaatcaacaatagaaatgtggtcaagatattaggatgttgtttggagacagaaattccattgcttgtttatgaattcattcctaatggta |
11845189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 11849819 - 11849917
Alignment:
| Q |
137 |
attctttcccaaatcaatcatagaaatgtggtaaagattttgggttgttgtttagagacagaagttccgttacttgtttacgaatttattcccaatggt |
235 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| ||||| || || |||||||| ||||||||| |||| || |||||||| ||||| ||||| |||||| |
|
|
| T |
11849819 |
attctttcacaaatcaacaatagaaatgtggtcaagatattaggatgttgtttggagacagaaattccattgcttgtttatgaattcattcctaatggt |
11849917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 160 - 305
Target Start/End: Complemental strand, 13765788 - 13765643
Alignment:
| Q |
160 |
aaatgtggtaaagattttgggttgttgtttagagacagaagttccgttacttgtttacgaatttattcccaatggtactgtttatgagcatattcatgat |
259 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||| |||||| |||||||||||||||| || | || |||||||| ||||||| ||||| |
|
|
| T |
13765788 |
aaatgtggtaaattttttgagttgttgtttagagacagaagttcccttacttctttacgaatttattcctaacgatattgtttatgcgcatattaatgat |
13765689 |
T |
|
| Q |
260 |
gaaacccaatctatgaagcttacatggaaaacaagattgagaatag |
305 |
Q |
| |
|
||| ||||||| | | ||||||||||||||||||||||||||||| |
|
|
| T |
13765688 |
caaagccaatctttaatgcttacatggaaaacaagattgagaatag |
13765643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 124 - 305
Target Start/End: Complemental strand, 14153584 - 14153407
Alignment:
| Q |
124 |
caatgaagtggtcattctttcccaaatcaatcatagaaatgtggtaaagattttgggttgttgttta-gagacagaagttccgttacttgtttacgaatt |
222 |
Q |
| |
|
|||| |||||||| |||||||||||||||| |||| |||||||||||| |||||||||||| |||| |||||||||||||| |||||||||||||| |
|
|
| T |
14153584 |
caataaagtggtcgttctttcccaaatcaaccatataaatgtggtaaatcttttgggttgttttttaagagacagaagttcc----cttgtttacgaatt |
14153489 |
T |
|
| Q |
223 |
tattcccaatggtactgtttatgagcatattcatgatgaaacccaatctatgaagcttacatggaaaacaagattgagaatag |
305 |
Q |
| |
|
|||| | ||||||| ||||||| | ||| |||||||| ||| ||||||| | |||||||||||||||||||||||| |||||| |
|
|
| T |
14153488 |
tattgc-aatggtattgtttattatcatcttcatgatcaaaaccaatctttaaagcttacatggaaaacaagattgtgaatag |
14153407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 119 - 309
Target Start/End: Original strand, 14155044 - 14155221
Alignment:
| Q |
119 |
ttcatcaatgaagtggtcattctttcccaaatcaatcatagaaatgtggtaaagattttgggttgttgtttagagacagaagttccgttacttgtttacg |
218 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||| | |||||||| |
|
|
| T |
14155044 |
ttcatcaatgaaatggttgttctttcccaaatcaatcatagaaatgtggtaaagcttttgg-ttgttgcttagagacaca------------tgtttacg |
14155130 |
T |
|
| Q |
219 |
aatttattcccaatggtactgtttatgagcatattcatgatgaaacccaatctatgaagcttacatggaaaacaagattgagaatagcaaa |
309 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| |||||||| ||| ||||||| | |||||||| ||||| |||||| ||||||| ||||| |
|
|
| T |
14155131 |
aatttattctcaatggtactgtttttgagcatcttcatgatcaaaaccaatctttaaagcttacttggaatacaagaatgagaatggcaaa |
14155221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 119 - 309
Target Start/End: Complemental strand, 14023088 - 14022911
Alignment:
| Q |
119 |
ttcatcaatgaagtggtcattctttcccaaatcaatcatagaaatgtggtaaagattttgggttgttgtttagagacagaagttccgttacttgtttacg |
218 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||| |||| |||| ||| ||||| ||||||||| ||||||||||||| | ||| ||||| |
|
|
| T |
14023088 |
ttcatcaatgaaatggttattctt-cccaaatcagtcatcgaaaggtgctaaagcttttgggtttttgtttagagacaca--ttc----------ttacg |
14023002 |
T |
|
| Q |
219 |
aatttattcccaatggtactgtttatgagcatattcatgatgaaacccaatctatgaagcttacatggaaaacaagattgagaatagcaaa |
309 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||| ||| ||||||| | | ||||||||||||||||||||||||||||||||| |
|
|
| T |
14023001 |
aatttatttccaatggtactgtttatgagcatcttcatgatcaaaaccaatctttaacgcttacatggaaaacaagattgagaatagcaaa |
14022911 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 243
Target Start/End: Original strand, 14023221 - 14023346
Alignment:
| Q |
118 |
gttcatcaatgaagtggtcattctttcccaaatcaatcatagaaatgtggtaaagattttgggttg-ttgtttagagacagaagttccgttacttgttta |
216 |
Q |
| |
|
|||| ||||| |||||||| |||||||| |||||||||||| ||||||||| | |||||||||| || |||| |||||||||||| ||||||||||| |
|
|
| T |
14023221 |
gttcgtcaataaagtggtcgttctttccaaaatcaatcatataaatgtggtgattcttttgggttgtttttttaaagacagaagttctcttacttgttta |
14023320 |
T |
|
| Q |
217 |
cgaatttattcccaatggtactgttta |
243 |
Q |
| |
|
||||||||| |||||||||| |||| |
|
|
| T |
14023321 |
tgaatttatt-gcaatggtactcttta |
14023346 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 9229833 - 9229739
Alignment:
| Q |
143 |
tcccaaatcaatcatagaaatgtggtaaagattttgggttgttgtttagagacagaagttccgttacttgtttacgaatttattcccaatggtac |
237 |
Q |
| |
|
|||||||| |||||||||||||| || || | ||||| |||||||| |||||| ||||||| ||||| ||||| ||||||||| ||||||||| |
|
|
| T |
9229833 |
tcccaaataaatcatagaaatgttgtcaaactcttgggatgttgtttggagacacaagttcctttactagtttatgaatttattagcaatggtac |
9229739 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 204
Target Start/End: Original strand, 9118313 - 9118474
Alignment:
| Q |
43 |
caaaggagttttacaagataacagaattgtagcaataaaaaagtccaaaataagtgacccgaaccagattgagtcgttcatcaatgaagtggtcattctt |
142 |
Q |
| |
|
|||||||||||||| ||||||||||| || || | |||||||||| ||||| ||| | || || || ||| ||||| ||||| || || ||||| |
|
|
| T |
9118313 |
caaaggagttttacccgataacagaatcgtggctgtcaaaaagtccagaataatagacgcaaatcaaatcgagcaattcattaatgaggtagttattctg |
9118412 |
T |
|
| Q |
143 |
tcccaaatcaatcatagaaatgtggtaaagattttgggttgttgtttagagacagaagttcc |
204 |
Q |
| |
|
|||||||| |||||||| ||||| || || |||| || ||||||||||||||||||||||| |
|
|
| T |
9118413 |
tcccaaataaatcataggaatgttgtcaaacttttagggtgttgtttagagacagaagttcc |
9118474 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 9162044 - 9161978
Alignment:
| Q |
138 |
ttctttcccaaatcaatcatagaaatgtggtaaagattttgggttgttgtttagagacagaagttcc |
204 |
Q |
| |
|
|||| |||||||| |||||||||||||| || || | ||||| ||||||||||||||||||||||| |
|
|
| T |
9162044 |
ttctgtcccaaataaatcatagaaatgttgtcaaactcttgggatgttgtttagagacagaagttcc |
9161978 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 204
Target Start/End: Complemental strand, 9200537 - 9200371
Alignment:
| Q |
38 |
gtttacaaaggagttttacaagataacagaattgtagcaataaaaaagtccaaaataagtgacccgaaccagattgagtcgttcatcaatgaagtggtca |
137 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| || ||||||| |||||||||| |||| | || || |||||| ||||| ||||| || || |
|
|
| T |
9200537 |
gtttacaaaggagttttacctgataacaaaattgtcgctgtaaaaaaatccaaaataattgacgcaaatcaaattgagcaattcattaatgaggtagttg |
9200438 |
T |
|
| Q |
138 |
ttctttcccaaatcaatcatagaaatgtggtaaagattttgggttgttgtttagagacagaagttcc |
204 |
Q |
| |
|
|||| ||||||| |||||||| ||||| || || | | || |||||| |||||||||||||||| |
|
|
| T |
9200437 |
ttctgacccaaataaatcataggaatgttgtcaaactcctaggctgttgtctagagacagaagttcc |
9200371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 119 - 234
Target Start/End: Original strand, 1868401 - 1868516
Alignment:
| Q |
119 |
ttcatcaatgaagtggtcattctttcccaaatcaatcatagaaatgtggtaaagattttgggttgttgtttagagacagaagttccgttacttgtttacg |
218 |
Q |
| |
|
||||| ||||| ||||| |||| || ||||| |||||||| ||||| || || | ||||| ||||||||||||||||||||||| || | ||||| | |
|
|
| T |
1868401 |
ttcattaatgaggtggttgttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatg |
1868500 |
T |
|
| Q |
219 |
aatttattcccaatgg |
234 |
Q |
| |
|
||||| || ||||||| |
|
|
| T |
1868501 |
aatttgttaccaatgg |
1868516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 1842810 - 1842907
Alignment:
| Q |
137 |
attctttcccaaatcaatcatagaaatgtggtaaagattttgggttgttgtttagagacagaagttccgttacttgtttacgaatttattcccaatgg |
234 |
Q |
| |
|
||||| || ||||| |||||||| ||||| || || | ||||| ||||||||||||||||||||||| || | ||||| |||||| || ||||||| |
|
|
| T |
1842810 |
attctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatgaatttgttaccaatgg |
1842907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 9156127 - 9156066
Alignment:
| Q |
143 |
tcccaaatcaatcatagaaatgtggtaaagattttgggttgttgtttagagacagaagttcc |
204 |
Q |
| |
|
|||||||| ||||| |||||||| || || | ||||| ||||||||||||||||||||||| |
|
|
| T |
9156127 |
tcccaaataaatcacagaaatgttgtcaaactcttgggatgttgtttagagacagaagttcc |
9156066 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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