View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15938_high_17 (Length: 326)
Name: NF15938_high_17
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15938_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 7 - 309
Target Start/End: Original strand, 3803881 - 3804183
Alignment:
| Q |
7 |
aggcatagcctgtgtttaactcagttctgcaaattaattaaacaatgtcacaattagcagtgtatgaacacatcaacaattcacacacacnnnnnnnnnt |
106 |
Q |
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| T |
3803881 |
aggcatagccattgtttaactcagttctgcaaattaattaaacaatgtcacaattagcagtgtatgaacacatcaacaattcacacacacaaaaaaaaat |
3803980 |
T |
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| Q |
107 |
tccagcgattgaagttattttggcagtgtacttgaaatcaataggtaaataaaagaaatcgaaagcaaaagtactttcttcaccattggattgatctata |
206 |
Q |
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| T |
3803981 |
tccagtgattgaagttattttggcagtgtacttgaaatcaataggtaaataaaggaaatcgaaagcaaaagtactttcttcaccattggattgatctata |
3804080 |
T |
|
| Q |
207 |
gcattttcaagcatgcaatgttcctccaagaaagccagcaacttatctcgactgtaccaacaagttgattaatgaatgaacaatcatgcatgcatcagtc |
306 |
Q |
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| T |
3804081 |
gcattttcaaacatgcaatgttcctccaagaaagccagcaacttatctcgactgtaccaacaagttgattaatgaatgaacaatcatgcatgcatcagtc |
3804180 |
T |
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| Q |
307 |
tta |
309 |
Q |
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||| |
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| T |
3804181 |
tta |
3804183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 26914069 - 26913776
Alignment:
| Q |
7 |
aggcatagcctgtgtttaactcagttctgcaaattaattaaacaatgtcacaattagcagtgtatgaacacatcaacaattcacacacacnnnnnnnnnt |
106 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||| || ||||||| | |
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| T |
26914069 |
aggcatagcctttgtttaactcagtactgcaaattaattaaacaatgtcacaattagcagtgtatgaacaaatccacattttacacaca--------aat |
26913978 |
T |
|
| Q |
107 |
tccagcgattgaagttattttggcagtgtacttgaaatcaataggtaaataaaagaaatcgaaagcaaaagtactttcttcaccattggattgatctata |
206 |
Q |
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|| || |||||||||||||| |||||||||| ||||||||||| || || | | || |||||||||||||||||||||||||||| ||||||| | |
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| T |
26913977 |
tctagtgattgaagttattt-ggcagtgtaccaaaaatcaataggcaagtatacggcattaaaagcaaaagtactttcttcaccattggcttgatctttg |
26913879 |
T |
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| Q |
207 |
gcattttcaagcatgcaatgttcctccaagaaagccagcaacttatctcgactgtaccaacaagttgattaatgaatgaacaatcatgcatgcatcagtc |
306 |
Q |
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||||||||| |||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
26913878 |
gcattttcacgcatgcaaaactcctccaagaaatccaacaacttatctcgactgtaccaacaagttgattaataaatgaacaatcatgcatgcataagtc |
26913779 |
T |
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