View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15938_high_19 (Length: 320)
Name: NF15938_high_19
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15938_high_19 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 9 - 320
Target Start/End: Complemental strand, 1934482 - 1934171
Alignment:
| Q |
9 |
aacataggctagagaggttgtcacaggttcacagggaatgcttgttggaaatgagattgttgttgttgaagagtcgtgagaagcgataaatagaatttta |
108 |
Q |
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| T |
1934482 |
aacataggctagagaggttgtcacaggttcacagggaatgcttgttggaaatgagattgttcttgttgaagagtcgtgagaagcgataaataaaatttta |
1934383 |
T |
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| Q |
109 |
aagattaggtgacaagtactggaaacatacgacaacaggctcactagatggattaatataaaattaaaatttagttagtgatacacaaactgtagcttag |
208 |
Q |
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| T |
1934382 |
aagattaggtgacaagtactggaaacatacgacaacaggctaactagatggattaatataaaattaaaatttagttagtgatacacaaactgtagcttag |
1934283 |
T |
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| Q |
209 |
aatgaatatttggagagtatacaatgtaagaataaacatgaccatattatacgaatttagtgcactgatcttacttgatgaagacatgatcaatctttgt |
308 |
Q |
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| T |
1934282 |
aatgaatatttggagagtatacaatgtaagaataaacatgaccatattatacgaatttagtgcactgatcttacttgatgaagacatgatcaatctttgt |
1934183 |
T |
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| Q |
309 |
tcggagcaaacc |
320 |
Q |
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| T |
1934182 |
tcggagcaaacc |
1934171 |
T |
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