View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15938_high_22 (Length: 306)
Name: NF15938_high_22
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15938_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 8332371 - 8332134
Alignment:
| Q |
19 |
atccaaacacaacagaaaacccacgtaaaaaatcttagaaaatgtagttaaaagatgaagaaatgaaacaagtgcaaaataacttttgaaataataatac |
118 |
Q |
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| T |
8332371 |
atccaaacacaacagaaaacccacgtaaaaaatcttagaaaatgtagttaaaagatgaagaaatgaaacaagtgcaaaataacttttgaaataataa--- |
8332275 |
T |
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| Q |
119 |
taacgataacttcctaacctttttagtattatatcctatgataannnnnnnaaggtaggaattatatactatgatatggtgaccctataaatagaccaag |
218 |
Q |
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| T |
8332274 |
taacgataacttcctaacctttttactattatatcctatgattttttttttaagcaaggaattatatactatgatatggtgacactataaatagaccaag |
8332175 |
T |
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| Q |
219 |
ttaaattacctaaatcatttcagctttgcacacttgcacag |
259 |
Q |
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| T |
8332174 |
ttaaattacctaaatcatttcagctttgcacacttgcacag |
8332134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 22 - 211
Target Start/End: Complemental strand, 8341047 - 8340847
Alignment:
| Q |
22 |
caaacacaacagaaaacccacgtaaaaaatcttagaaaatgtagttaaaagatgaagaaatgaaacaagtgcaaa---------------ataacttttg |
106 |
Q |
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|||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
8341047 |
caaacacaaccgaaaacccacgtaaaaaatcatagaaaaggtagttaaaagatgaagaaatgaaacatgtgcaaaataaaataattttgaataacttttg |
8340948 |
T |
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| Q |
107 |
aaataataatactaacgataacttcctaacctttttagtattatatcctatgataannnnnnnaaggtaggaattatatactatgatatggtgaccctat |
206 |
Q |
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| T |
8340947 |
aaataataata--atcg-taacttcctaacctttttagtattatatcctatgat-atttatttaaggaaggatttatatactatgatatgatgacaccat |
8340852 |
T |
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| Q |
207 |
aaata |
211 |
Q |
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||||| |
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| T |
8340851 |
aaata |
8340847 |
T |
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