View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15938_high_28 (Length: 274)

Name: NF15938_high_28
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15938_high_28
NF15938_high_28
[»] chr4 (11 HSPs)
chr4 (5-274)||(1374063-1374321)
chr4 (1-34)||(28663715-28663748)
chr4 (1-33)||(3564349-3564381)
chr4 (1-31)||(54593666-54593696)
chr4 (4-33)||(948221-948250)
chr4 (6-35)||(22273759-22273788)
chr4 (1-33)||(17222972-17223004)
chr4 (1-33)||(35124355-35124387)
chr4 (1-33)||(35405653-35405685)
chr4 (1-33)||(43699569-43699601)
chr4 (1-33)||(48591335-48591367)
[»] chr8 (8 HSPs)
chr8 (1-33)||(11460791-11460823)
chr8 (1-33)||(11460846-11460878)
chr8 (1-33)||(10480029-10480061)
chr8 (1-33)||(13131586-13131618)
chr8 (1-33)||(15763231-15763263)
chr8 (1-33)||(28879198-28879230)
chr8 (1-33)||(32131408-32131440)
chr8 (1-33)||(34286475-34286507)
[»] chr7 (9 HSPs)
chr7 (1-33)||(29390462-29390494)
chr7 (1-32)||(6406779-6406810)
chr7 (4-33)||(23119851-23119880)
chr7 (1-33)||(1053979-1054011)
chr7 (1-33)||(20888717-20888749)
chr7 (1-33)||(29378788-29378820)
chr7 (1-33)||(38372526-38372558)
chr7 (1-33)||(40629344-40629376)
chr7 (1-33)||(47033722-47033754)
[»] chr1 (12 HSPs)
chr1 (1-33)||(994623-994655)
chr1 (1-33)||(26988291-26988323)
chr1 (2-33)||(26946015-26946046)
chr1 (1-33)||(1565286-1565318)
chr1 (1-33)||(26435086-26435118)
chr1 (1-33)||(26946191-26946223)
chr1 (1-33)||(28690147-28690179)
chr1 (1-33)||(35897530-35897562)
chr1 (1-33)||(37329323-37329355)
chr1 (1-33)||(37431277-37431309)
chr1 (1-33)||(37712210-37712242)
chr1 (1-33)||(47413515-47413547)
[»] chr5 (11 HSPs)
chr5 (1-36)||(40452385-40452420)
chr5 (1-31)||(17128400-17128430)
chr5 (1-33)||(1372079-1372111)
chr5 (1-33)||(1576774-1576806)
chr5 (1-33)||(1608009-1608041)
chr5 (1-33)||(7364078-7364110)
chr5 (1-33)||(14243968-14244000)
chr5 (1-33)||(22573782-22573814)
chr5 (1-33)||(35536987-35537019)
chr5 (1-33)||(40697149-40697181)
chr5 (1-33)||(41534771-41534803)
[»] chr3 (6 HSPs)
chr3 (2-33)||(35480313-35480344)
chr3 (1-34)||(50540425-50540458)
chr3 (1-33)||(20685928-20685960)
chr3 (1-33)||(29270329-29270361)
chr3 (1-33)||(34707799-34707831)
chr3 (1-33)||(53261678-53261710)
[»] chr6 (4 HSPs)
chr6 (1-33)||(10755194-10755226)
chr6 (1-33)||(12816812-12816844)
chr6 (1-33)||(21871195-21871227)
chr6 (1-33)||(25430849-25430881)
[»] chr2 (4 HSPs)
chr2 (1-33)||(4533465-4533497)
chr2 (1-33)||(8832600-8832632)
chr2 (1-33)||(38215991-38216023)
chr2 (1-33)||(43787743-43787775)


Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 1374321 - 1374063
Alignment:
Q  5 tcataagctcaaaaataagtcaatccaaa-gagtccacagtggcagttcattgaccagtctgcaatgatagatatttgcttttaaaaggagactcagact 103  Q
    |||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||| ||| ||        |||||||||||||||||||    
T  1374321 tcataagctcaaaaataattcaatccaaacgagtccatagtggcagttcattgaccagtctgcaatcatatat--------ttaaaaggagactcagact 1374230  T
Q  104 tggtgtttcttttggggaaatagtgttctgcttcattcaaaatcaataaagtatagattgtttcaatttcagttcatattagtcaaggacttggatct-t 202  Q
     |||||||| |||||||||||    ||||| |||||||||||||||| || ||||| ||||||||||||| ||||||||||||| ||||||||||||| |    
T  1374229 cggtgtttcgtttggggaaat----ttctggttcattcaaaatcaatgaactataggttgtttcaatttccgttcatattagtcgaggacttggatcttt 1374134  T
Q  203 tttctgtgatgagaccatctaaagctgaattgatatattgtatctataaagttccttattgccataaagaat 274  Q
    ||||  ||| |||||||||||||||| |  |||||||||| ||||||||| ||||||| |||||||||||||    
T  1374133 tttcgctgacgagaccatctaaagcttagctgatatattgcatctataaatttcctta-tgccataaagaat 1374063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 28663715 - 28663748
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaag 34  Q
    ||||||||||||||||||||||||||||||||||    
T  28663715 tttttcataagctcaaaaataagtcaatccaaag 28663748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 3564349 - 3564381
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  3564349 tttttcataagctcaaaaataagtcaatccaaa 3564381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 54593666 - 54593696
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatcca 31  Q
    |||||||||||||||||||||||||||||||    
T  54593666 tttttcataagctcaaaaataagtcaatcca 54593696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 33
Target Start/End: Original strand, 948221 - 948250
Alignment:
Q  4 ttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||||||||||||||||||||||    
T  948221 ttcataagctcaaaaataagtcaatccaaa 948250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 22273788 - 22273759
Alignment:
Q  6 cataagctcaaaaataagtcaatccaaaga 35  Q
    ||||||||||||||||||||||||||||||    
T  22273788 cataagctcaaaaataagtcaatccaaaga 22273759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 17222972 - 17223004
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||||||||||||||| |||||||||    
T  17222972 tttttcataagctcaaaaataagccaatccaaa 17223004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 35124387 - 35124355
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    |||| ||||||||||||||||||||||||||||    
T  35124387 ttttgcataagctcaaaaataagtcaatccaaa 35124355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 35405685 - 35405653
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    |||| ||||||||||||||||||||||||||||    
T  35405685 ttttgcataagctcaaaaataagtcaatccaaa 35405653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 43699569 - 43699601
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||||||||||||||| |||||||||    
T  43699569 tttttcataagctcaaaaataagccaatccaaa 43699601  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 48591367 - 48591335
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||||||||||||||| |||||||||    
T  48591367 tttttcataagctcaaaaataagccaatccaaa 48591335  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 11460791 - 11460823
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  11460791 tttttcataagctcaaaaataagtcaatccaaa 11460823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 11460846 - 11460878
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  11460846 tttttcataagctcaaaaataagtcaatccaaa 11460878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 10480061 - 10480029
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||||||||||||||| |||||||||    
T  10480061 tttttcataagctcaaaaataagccaatccaaa 10480029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 13131586 - 13131618
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||||| |||||||||||||||||||    
T  13131586 tttttcataagcttaaaaataagtcaatccaaa 13131618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 15763231 - 15763263
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    |||||||||| ||||||||||||||||||||||    
T  15763231 tttttcataaactcaaaaataagtcaatccaaa 15763263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 28879198 - 28879230
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||||| |||||||||||||||||||    
T  28879198 tttttcataagctaaaaaataagtcaatccaaa 28879230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 32131440 - 32131408
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    |||| ||||||||||||||||||||||||||||    
T  32131440 ttttgcataagctcaaaaataagtcaatccaaa 32131408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 34286507 - 34286475
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    |||||||||||||||||||||||||||| ||||    
T  34286507 tttttcataagctcaaaaataagtcaattcaaa 34286475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 29390494 - 29390462
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  29390494 tttttcataagctcaaaaataagtcaatccaaa 29390462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 6406810 - 6406779
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  6406810 tttttcataagctcaaaaataagtcaatccaa 6406779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 33
Target Start/End: Complemental strand, 23119880 - 23119851
Alignment:
Q  4 ttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||||||||||||||||||||||    
T  23119880 ttcataagctcaaaaataagtcaatccaaa 23119851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1054011 - 1053979
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||| |||||||||||||||||||||||    
T  1054011 tttttcatatgctcaaaaataagtcaatccaaa 1053979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 20888717 - 20888749
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    |||||||||||||||||||||||| ||||||||    
T  20888717 tttttcataagctcaaaaataagtaaatccaaa 20888749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29378788 - 29378820
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    |||||||||| ||||||||||||||||||||||    
T  29378788 tttttcataaactcaaaaataagtcaatccaaa 29378820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 38372558 - 38372526
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    |||| ||||||||||||||||||||||||||||    
T  38372558 ttttgcataagctcaaaaataagtcaatccaaa 38372526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 40629376 - 40629344
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||||||||||||||| |||||||||    
T  40629376 tttttcataagctcaaaaataagccaatccaaa 40629344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 47033754 - 47033722
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    |||||||||||||||||||||| ||||||||||    
T  47033754 tttttcataagctcaaaaataaatcaatccaaa 47033722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 994655 - 994623
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  994655 tttttcataagctcaaaaataagtcaatccaaa 994623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 26988291 - 26988323
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  26988291 tttttcataagctcaaaaataagtcaatccaaa 26988323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 33
Target Start/End: Complemental strand, 26946046 - 26946015
Alignment:
Q  2 ttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||||||||||||||||||||||||    
T  26946046 ttttcataagctcaaaaataagtcaatccaaa 26946015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1565318 - 1565286
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||||||||||||||| |||||||||    
T  1565318 tttttcataagctcaaaaataagccaatccaaa 1565286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 26435118 - 26435086
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||||| |||||||||||||||||||    
T  26435118 tttttcataagcttaaaaataagtcaatccaaa 26435086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 26946191 - 26946223
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    |||| ||||||||||||||||||||||||||||    
T  26946191 ttttgcataagctcaaaaataagtcaatccaaa 26946223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 28690147 - 28690179
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||||||||||| |||||||||||||    
T  28690147 tttttcataagctcaaaaacaagtcaatccaaa 28690179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 35897562 - 35897530
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  35897562 tttttcataagttcaaaaataagtcaatccaaa 35897530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 37329355 - 37329323
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||||||||||||||||| |||||||    
T  37329355 tttttcataagctcaaaaataagtcgatccaaa 37329323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 37431277 - 37431309
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    |||||||| ||||||||||||||||||||||||    
T  37431277 tttttcatgagctcaaaaataagtcaatccaaa 37431309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 37712210 - 37712242
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    |||||| ||||||||||||||||||||||||||    
T  37712210 tttttcgtaagctcaaaaataagtcaatccaaa 37712242  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 47413515 - 47413547
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||||||||||||||| |||||||||    
T  47413515 tttttcataagctcaaaaataagccaatccaaa 47413547  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 40452420 - 40452385
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaagag 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  40452420 tttttcataagctcaaaaataagccaatccaaagag 40452385  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 17128400 - 17128430
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatcca 31  Q
    |||||||||||||||||||||||||||||||    
T  17128400 tttttcataagctcaaaaataagtcaatcca 17128430  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1372079 - 1372111
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    |||| ||||||||||||||||||||||||||||    
T  1372079 ttttgcataagctcaaaaataagtcaatccaaa 1372111  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1576774 - 1576806
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||||||||||||||| |||||||||    
T  1576774 tttttcataagctcaaaaataagccaatccaaa 1576806  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1608041 - 1608009
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||||||||||||||| |||||||||    
T  1608041 tttttcataagctcaaaaataagccaatccaaa 1608009  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 7364110 - 7364078
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||||||||||||||||||| |||||    
T  7364110 tttttcataagctcaaaaataagtcaacccaaa 7364078  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 14243968 - 14244000
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||||||||||||||||| |||||||    
T  14243968 tttttcataagctcaaaaataagtctatccaaa 14244000  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 22573782 - 22573814
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||||||||||||||| |||||||||    
T  22573782 tttttcataagctcaaaaataagccaatccaaa 22573814  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 35536987 - 35537019
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    |||||||||| ||||||||||||||||||||||    
T  35536987 tttttcataatctcaaaaataagtcaatccaaa 35537019  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 40697149 - 40697181
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||||||||||||||| |||||||||    
T  40697149 tttttcataagctcaaaaataagccaatccaaa 40697181  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 41534771 - 41534803
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||||||||||||||| |||||||||    
T  41534771 tttttcataagctcaaaaataagccaatccaaa 41534803  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 33
Target Start/End: Complemental strand, 35480344 - 35480313
Alignment:
Q  2 ttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||||||||||||||||||||||||    
T  35480344 ttttcataagctcaaaaataagtcaatccaaa 35480313  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 50540458 - 50540425
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaag 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  50540458 tttttcataagctcaaaaataagacaatccaaag 50540425  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 20685928 - 20685960
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||||| |||||||||||||||||||    
T  20685928 tttttcataagctaaaaaataagtcaatccaaa 20685960  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 29270361 - 29270329
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    |||| ||||||||||||||||||||||||||||    
T  29270361 ttttgcataagctcaaaaataagtcaatccaaa 29270329  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 34707799 - 34707831
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    |||| ||||||||||||||||||||||||||||    
T  34707799 ttttgcataagctcaaaaataagtcaatccaaa 34707831  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 53261710 - 53261678
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    |||||||||||||||||| ||||||||||||||    
T  53261710 tttttcataagctcaaaactaagtcaatccaaa 53261678  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 10755226 - 10755194
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||| |||||||||||||||||||||||||    
T  10755226 tttttcagaagctcaaaaataagtcaatccaaa 10755194  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 12816844 - 12816812
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    |||||||||||||||||||||||| ||||||||    
T  12816844 tttttcataagctcaaaaataagttaatccaaa 12816812  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 21871227 - 21871195
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||||| |||||||||||||||||||    
T  21871227 tttttcataagctaaaaaataagtcaatccaaa 21871195  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 25430849 - 25430881
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    |||| ||||||||||||||||||||||||||||    
T  25430849 ttttacataagctcaaaaataagtcaatccaaa 25430881  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 4533465 - 4533497
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    |||||||||||||||||||||||| ||||||||    
T  4533465 tttttcataagctcaaaaataagttaatccaaa 4533497  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 8832600 - 8832632
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||||| |||||||||||||||||||    
T  8832600 tttttcataagctaaaaaataagtcaatccaaa 8832632  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 38216023 - 38215991
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    |||| ||||||||||||||||||||||||||||    
T  38216023 ttttgcataagctcaaaaataagtcaatccaaa 38215991  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 43787775 - 43787743
Alignment:
Q  1 tttttcataagctcaaaaataagtcaatccaaa 33  Q
    ||||||||||||| |||||||||||||||||||    
T  43787775 tttttcataagctaaaaaataagtcaatccaaa 43787743  T

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