View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15938_high_32 (Length: 256)

Name: NF15938_high_32
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15938_high_32
NF15938_high_32
[»] chr5 (7 HSPs)
chr5 (11-221)||(10647586-10647795)
chr5 (140-221)||(20503853-20503934)
chr5 (145-188)||(10641691-10641734)
chr5 (141-221)||(29656912-29656991)
chr5 (181-212)||(10642176-10642207)
chr5 (175-221)||(21012062-21012108)
chr5 (122-218)||(1401750-1401845)
[»] chr3 (12 HSPs)
chr3 (11-221)||(48761240-48761449)
chr3 (11-221)||(48760985-48761194)
chr3 (33-222)||(48760756-48760944)
chr3 (78-221)||(9640247-9640389)
chr3 (111-193)||(4998382-4998465)
chr3 (141-221)||(14175706-14175785)
chr3 (141-221)||(41828188-41828267)
chr3 (141-221)||(54418908-54418987)
chr3 (175-221)||(32793280-32793326)
chr3 (175-221)||(50833653-50833699)
chr3 (175-221)||(50842154-50842200)
chr3 (141-221)||(953024-953103)
[»] chr6 (4 HSPs)
chr6 (11-221)||(5168956-5169165)
chr6 (147-221)||(29535395-29535468)
chr6 (141-221)||(29535855-29535934)
chr6 (147-221)||(29535625-29535698)
[»] scaffold1598 (2 HSPs)
scaffold1598 (11-221)||(177-386)
scaffold1598 (11-142)||(1-131)
[»] chr2 (5 HSPs)
chr2 (11-208)||(41750600-41750796)
chr2 (141-221)||(9059870-9059949)
chr2 (175-221)||(40915526-40915572)
chr2 (141-218)||(12447168-12447244)
chr2 (157-221)||(13067190-13067254)
[»] chr7 (6 HSPs)
chr7 (11-221)||(24764954-24765164)
chr7 (175-221)||(18418446-18418492)
chr7 (141-221)||(85284-85363)
chr7 (141-221)||(39444986-39445065)
chr7 (141-218)||(40722602-40722678)
chr7 (141-193)||(48829733-48829785)
[»] chr1 (6 HSPs)
chr1 (78-221)||(10893842-10893985)
chr1 (141-221)||(23260954-23261033)
chr1 (141-221)||(42772459-42772538)
chr1 (140-208)||(46115296-46115365)
chr1 (121-221)||(47914577-47914677)
chr1 (157-220)||(48538558-48538621)
[»] chr4 (6 HSPs)
chr4 (170-221)||(1663567-1663618)
chr4 (141-218)||(16032613-16032689)
chr4 (140-208)||(34708216-34708283)
chr4 (141-221)||(56478907-56478986)
chr4 (111-193)||(52683130-52683213)
chr4 (175-221)||(50233042-50233088)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 10647586 - 10647795
Alignment:
Q  11 caaagggaggagaaattttagcatagttaaccaaaaggaaccgaatggttttgaattaattcactgaaaaatatttttaaaattcaaattgcaaatgcca 110  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||| ||||||| ||||||||||||||||||||     
T  10647586 caaagagaggagaaattttagcatagttaacaaaaaggaaccgaatagttttggattaattcactgaaaa-tatttttgaaattcaaattgcaaatgcct 10647684  T
Q  111 taggagggaaatatttttaggttaacctcattagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10647685 taggagggaaatatttttaggttaacctcattagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaa 10647784  T
Q  211 ggagtaaggga 221  Q
    |||||||||||    
T  10647785 ggagtaaggga 10647795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 20503853 - 20503934
Alignment:
Q  140 attagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaaggga 221  Q
    ||||||| | |||| ||| |||||||||||||||| ||||||||||| | |||| |||||||||||||| | ||||||||||    
T  20503853 attagcaattaatgatgcggttttagagccaaaaaattagggttaaggtattgcaaacctaacaacttttaagagtaaggga 20503934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 10641691 - 10641734
Alignment:
Q  145 cattaaatgctgcagttttagagccaaaaatttagggttaagtt 188  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  10641691 catttaatgctgcagttttagagccaaaaatttagggttaagtt 10641734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 29656912 - 29656991
Alignment:
Q  141 ttagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaaggga 221  Q
    |||||||| ||||||||| |||| ||||||||  | ||||||||||||||||| ||||||| ||  |||| ||||||||||    
T  29656912 ttagcatttaatgctgcaattttggagccaaatttatagggttaagttgttgc-aacctaataagattaaagagtaaggga 29656991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 212
Target Start/End: Original strand, 10642176 - 10642207
Alignment:
Q  181 gttaagttgttgctaacctaacaactttaagg 212  Q
    ||||||||||||||||||||||||||||||||    
T  10642176 gttaagttgttgctaacctaacaactttaagg 10642207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 21012062 - 21012108
Alignment:
Q  175 tttagggttaagttgttgctaacctaacaactttaaggagtaaggga 221  Q
    |||||||||||||  |||||||||||| ||| |||||||||||||||    
T  21012062 tttagggttaagtgattgctaacctaataacattaaggagtaaggga 21012108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 218
Target Start/End: Complemental strand, 1401845 - 1401750
Alignment:
Q  122 tatttttaggttaacctcattagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaag 218  Q
    |||||| |||||||| ||||||||||||| ||||||   ||| |  |||||  ||||||||||| ||| ||| ||||||| ||||||||||| ||||    
T  1401845 tattttaaggttaac-tcattagcattaattgctgctaatttggctccaaatctttagggttaacttgatgcaaacctaataactttaaggaataag 1401750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 48761449 - 48761240
Alignment:
Q  11 caaagggaggagaaattttagcatagttaaccaaaaggaaccgaatggttttgaattaattcactgaaaaatatttttaaaattcaaattgcaaatgcca 110  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||     
T  48761449 caaagagaggagaaattttagcatagttaaccaaaaggaaccgaatggttttggattaattcactgaaaa-tatttttgaaattcaaattgcaaatgcct 48761351  T
Q  111 taggagggaaatatttttaggttaacctcattagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  48761350 taggagggaaatatttttaggttaacctcattagcattaaatgctgcagttttagaggcaaaaatttagggttaaattgttgctaacctaacaactttaa 48761251  T
Q  211 ggagtaaggga 221  Q
    |||||||||||    
T  48761250 ggagtaaggga 48761240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 48761194 - 48760985
Alignment:
Q  11 caaagggaggagaaattttagcatagttaaccaaaaggaaccgaatggttttgaattaattcactgaaaaatatttttaaaattcaaattgcaaatgcca 110  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||     
T  48761194 caaagagaggagaaattttagcatagttaaccaaaaggaaccaaatggttttggattaattcactgaaaa-tatttttgaaattcaaattgcaaatgcct 48761096  T
Q  111 taggagggaaatatttttaggttaacctcattagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaa 210  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48761095 taggagggaaatatttttaggttaacctcattggcattaaatgctgcaattttagagtcaaaaatttagggttaagttgttgctaacctaacaactttaa 48760996  T
Q  211 ggagtaaggga 221  Q
    |||| ||||||    
T  48760995 ggagcaaggga 48760985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 33 - 222
Target Start/End: Complemental strand, 48760944 - 48760756
Alignment:
Q  33 atagttaaccaaaaggaaccgaatggttttgaattaattcactgaaaaatatttttaaaattcaaattgcaaatgccataggagggaaatatttttaggt 132  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  48760944 atagttaatcaaaaggaaccgaatggttttgaattaattcattgaaaa-tatttttgaaattcaaattgcaaatgccttaggagggaaatatttttaggt 48760846  T
Q  133 taacctcattagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaagggag 222  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  48760845 taacctcattagcattaaatgttgcagttttagagccaaaattttagggttaagttgttgctaacctaacaactctaaggagtaagggag 48760756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 78 - 221
Target Start/End: Complemental strand, 9640389 - 9640247
Alignment:
Q  78 aaaatatttttaaaattcaaattgcaaatgccataggagggaaatatttttaggttaacctcattagcattaaatgctgcagttttagagccaaaaattt 177  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  9640389 aaaatatttttgaaattcaaattgcaaatgccttaggagggaaatatttttaggttaac-tcattagcattaaatgctgcatttttagagccaaaaattt 9640291  T
Q  178 agggttaagttgttgctaacctaacaactttaaggagtaaggga 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9640290 agggttaagttgttgctaacctaacaactttaaggagtaaggga 9640247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 193
Target Start/End: Complemental strand, 4998465 - 4998382
Alignment:
Q  111 taggagggaaatatttttag-gttaacctcattagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgc 193  Q
    |||||||||||||||||||| |||||||| ||||||||| ||||||||    |||||||||||| ||||||||| ||| |||||    
T  4998465 taggagggaaatatttttagagttaacctaattagcatttaatgctgccaaattagagccaaaattttagggtttagtggttgc 4998382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 14175706 - 14175785
Alignment:
Q  141 ttagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaaggga 221  Q
    |||||||| ||||||||| |||| ||||||||  | ||||||||||||||||| ||||||| ||  |||||||||||||||    
T  14175706 ttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgc-aacctaataagattaaggagtaaggga 14175785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 41828267 - 41828188
Alignment:
Q  141 ttagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaaggga 221  Q
    |||||||| ||||||||| |||| ||||||||  | ||||||||||||||||| ||||||| ||  |||||||||||||||    
T  41828267 ttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgc-aacctaataagattaaggagtaaggga 41828188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 54418987 - 54418908
Alignment:
Q  141 ttagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaaggga 221  Q
    |||||||| ||||||||| |||| ||||||||  | ||||||||||||||||| ||||||| ||  |||||||||||||||    
T  54418987 ttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgc-aacctaataagattaaggagtaaggga 54418908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 32793280 - 32793326
Alignment:
Q  175 tttagggttaagttgttgctaacctaacaactttaaggagtaaggga 221  Q
    |||||||||||||  |||||||||||| ||| |||||||||||||||    
T  32793280 tttagggttaagtgattgctaacctaataacattaaggagtaaggga 32793326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 50833653 - 50833699
Alignment:
Q  175 tttagggttaagttgttgctaacctaacaactttaaggagtaaggga 221  Q
    |||||||||||||  |||||||||||| ||| |||||||||||||||    
T  50833653 tttagggttaagtgattgctaacctaataacattaaggagtaaggga 50833699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 50842200 - 50842154
Alignment:
Q  175 tttagggttaagttgttgctaacctaacaactttaaggagtaaggga 221  Q
    |||||||||||||  |||||||||||| ||| |||||||||||||||    
T  50842200 tttagggttaagtgattgctaacctaataacattaaggagtaaggga 50842154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 953024 - 953103
Alignment:
Q  141 ttagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaaggga 221  Q
    |||||||| ||||||| | |||| |||| |||  | ||||||||||||||||| ||||||| ||  |||||||||||||||    
T  953024 ttagcatttaatgctgtaatttttgagctaaatttctagggttaagttgttgc-aacctaataagattaaggagtaaggga 953103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 5169165 - 5168956
Alignment:
Q  11 caaagggaggagaaattttagcatagttaaccaaaaggaaccgaatggttttgaattaattcactgaaaaatatttttaaaattcaaattgcaaatgcca 110  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||     
T  5169165 caaagagaggagaaattttagcatagttaaccaaaaggaaacgaatggttttggattaattcactgaaaa-tatttttgaaattcaaattgcaaatgcct 5169067  T
Q  111 taggagggaaatatttttaggttaacctcattagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  5169066 taggagggaaatatttttaggttaacctcattagcattaaatgctgcagttttagaggcaaaaatttagggttaaattgttgctaacctaacaactttaa 5168967  T
Q  211 ggagtaaggga 221  Q
    |||||||||||    
T  5168966 ggagtaaggga 5168956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 29535395 - 29535468
Alignment:
Q  147 ttaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaaggga 221  Q
    |||||||||||| |||| ||||||||  | ||||||||||||||||| ||||||| ||  |||||||||||||||    
T  29535395 ttaaatgctgcaattttggagccaaatttatagggttaagttgttgc-aacctaataagattaaggagtaaggga 29535468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 29535855 - 29535934
Alignment:
Q  141 ttagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaaggga 221  Q
    ||||||||||||||| || |||| ||||||||  | ||||||||| ||||||| ||||||| ||  |||||||||||||||    
T  29535855 ttagcattaaatgctacaattttggagccaaatttctagggttaaattgttgc-aacctaataagattaaggagtaaggga 29535934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 29535625 - 29535698
Alignment:
Q  147 ttaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaaggga 221  Q
    |||||||||||| ||||  |||||||  | ||||||||||||||||| ||||||| ||  |||||||||||||||    
T  29535625 ttaaatgctgcaattttgaagccaaatttatagggttaagttgttgc-aacctaataagattaaggagtaaggga 29535698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1598 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: scaffold1598
Description:

Target: scaffold1598; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 386 - 177
Alignment:
Q  11 caaagggaggagaaattttagcatagttaaccaaaaggaaccgaatggttttgaattaattcactgaaaaatatttttaaaattcaaattgcaaatgcca 110  Q
    ||||| ||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||     
T  386 caaagagaggagaaattttagcatagttaaccaaaaggaattgaatggttttggattaattcactgaaaa-tatttttgaaattcaaattgcaaatgcct 288  T
Q  111 taggagggaaatatttttaggttaacctcattagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  287 taggagggaaatatttttaggttaacctcattagcattaaatgctgcagttttagaggcaaaaatttagggttaaattgttgctaacctaacaactttaa 188  T
Q  211 ggagtaaggga 221  Q
    |||||||||||    
T  187 ggagtaaggga 177  T

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Target: scaffold1598; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 131 - 1
Alignment:
Q  11 caaagggaggagaaattttagcatagttaaccaaaaggaaccgaatggttttgaattaattcactgaaaaatatttttaaaattcaaattgcaaatgcca 110  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||     
T  131 caaagagaggagaaattttagcatagttaaccaaaaggaaccaaatggttttggattaattcactg-aaaatatttttgaaattcaaattgcaaatgcct 33  T
Q  111 taggagggaaatatttttaggttaacctcatt 142  Q
    ||||||||||||||||||||||||||||||||    
T  32 taggagggaaatatttttaggttaacctcatt 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 41750796 - 41750600
Alignment:
Q  11 caaagggaggagaaattttagcatagttaaccaaaaggaaccgaatggttttgaattaattcactgaaaaatatttttaaaattcaaattgcaaatgcca 110  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||     
T  41750796 caaagagaggagaaattttagcatagttaaccaaaaggaacggaatggttttggattaattcactgaaaa-tatttttgaaattcaaattgcaaatgcct 41750698  T
Q  111 taggagggaaatatttttaggttaacctcattagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaacttt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41750697 taggagggaaatatttttaggttaacctcattagcattaaatgctgcaattttagagccaaaaatttagggttaagttgtggctaacctaacaacttt 41750600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 9059870 - 9059949
Alignment:
Q  141 ttagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaaggga 221  Q
    |||||||| ||||||||| |||||||| ||||  ||||||||||||||||||| ||||||| ||  |||||||||||||||    
T  9059870 ttagcatttaatgctgcaattttagagtcaaatttttagggttaagttgttgc-aacctaataagattaaggagtaaggga 9059949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 40915526 - 40915572
Alignment:
Q  175 tttagggttaagttgttgctaacctaacaactttaaggagtaaggga 221  Q
    |||||||||||||  |||||||||||||||| |||||||||||||||    
T  40915526 tttagggttaagtgattgctaacctaacaacattaaggagtaaggga 40915572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 12447168 - 12447244
Alignment:
Q  141 ttagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaag 218  Q
    |||||||| ||||||||| |||| ||||||||  | ||||||||||||||||| ||||||| ||  ||||||||||||    
T  12447168 ttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgc-aacctaataagattaaggagtaag 12447244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 13067190 - 13067254
Alignment:
Q  157 cagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaaggga 221  Q
    |||||||||||  |||  |||||||||||||  |||||||||||| ||| |||||||||||||||    
T  13067190 cagttttagagggaaatttttagggttaagtgattgctaacctaataacattaaggagtaaggga 13067254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 24765164 - 24764954
Alignment:
Q  11 caaagggaggagaaattttagcatagttaaccaaaaggaaccgaatggttttgaattaattcactgaaaaatatttttaaaattcaaattgcaaatgcca 110  Q
    ||||| ||||| |||||||||| ||| |||||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||     
T  24765164 caaagagaggataaattttagcttaggtaaccaaaaggaactgaatggttttggattaattcactgaaaa-tatttttgaaattcaaattgcaaatgcct 24765066  T
Q  111 taggagggaaatatttttaggttaacctcattagcattaaatgctgcagttttaga-gccaaaaatttagggttaagttgttgctaacctaacaacttta 209  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||    
T  24765065 taggaggaaaatatttttaggttaacctcattagcattaaatgctgcagttttagaggcaaaaaaattagggttaagttgttgctaacctaacaacttta 24764966  T
Q  210 aggagtaaggga 221  Q
    ||||||||||||    
T  24764965 aggagtaaggga 24764954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 18418446 - 18418492
Alignment:
Q  175 tttagggttaagttgttgctaacctaacaactttaaggagtaaggga 221  Q
    |||||||||||||  |||||||||||||||| |||||||||||||||    
T  18418446 tttagggttaagtgattgctaacctaacaacattaaggagtaaggga 18418492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 85284 - 85363
Alignment:
Q  141 ttagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaaggga 221  Q
    |||||||| |||  |||| |||| ||||||||| | ||||||||||||||||| ||||||| ||  |||||||||||||||    
T  85284 ttagcatttaatattgcaattttggagccaaaattctagggttaagttgttgc-aacctaataagattaaggagtaaggga 85363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 39445065 - 39444986
Alignment:
Q  141 ttagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaaggga 221  Q
    |||||||| ||||||||| |||| ||||||||  | ||||||||||||||||| ||||||| ||  |||| ||||||||||    
T  39445065 ttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgc-aacctaataagattaaagagtaaggga 39444986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 40722678 - 40722602
Alignment:
Q  141 ttagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaag 218  Q
    |||||||| ||||||||| |||| ||||||||  | ||||||||||||||||| ||||||| ||  || |||||||||    
T  40722678 ttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgc-aacctaataaaatttaggagtaag 40722602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 48829785 - 48829733
Alignment:
Q  141 ttagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgc 193  Q
    |||||||| ||||||||| |||| ||||||||  | |||||||||||||||||    
T  48829785 ttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgc 48829733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 78 - 221
Target Start/End: Original strand, 10893842 - 10893985
Alignment:
Q  78 aaaatatttttaaaattcaaattgcaaatgccataggagggaaatatttttaggttaacctcattagcattaaatgctgcagttttagagccaaaaattt 177  Q
    ||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  10893842 aaaatatttttgaaattcaaattgcaaatgccttaggagagaaatatttttaggttaacctcattagcattaaatgttgtagttttagagccaaaaattt 10893941  T
Q  178 agggttaagttgttgctaacctaacaactttaaggagtaaggga 221  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  10893942 agggttaagttgttgccaacctaacaactttaaggagtaaggga 10893985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 23261033 - 23260954
Alignment:
Q  141 ttagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaaggga 221  Q
    |||||||| ||||||||| |||| ||||||||  | ||||||||||||||||| ||||||| ||  |||||||||||||||    
T  23261033 ttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgc-aacctaataagattaaggagtaaggga 23260954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 42772538 - 42772459
Alignment:
Q  141 ttagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaaggga 221  Q
    |||||||| ||||||||| |||| ||||||||  | ||||||||||||||||| ||||||| ||  |||||||||||||||    
T  42772538 ttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgc-aacctaataagattaaggagtaaggga 42772459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 46115296 - 46115365
Alignment:
Q  140 attagcattaaatgctgcagttttagagccaaaaatt-tagggttaagttgttgctaacctaacaacttt 208  Q
    ||||||| | |||| ||||||||||||||||||||   |||||||||| |||||| ||||||||||||||    
T  46115296 attagcaattaatgatgcagttttagagccaaaaaaagtagggttaaggtgttgcaaacctaacaacttt 46115365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 47914577 - 47914677
Alignment:
Q  121 atatttttaggttaacctca-ttagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaagg 219  Q
    ||||||||||| | | |||| |||||||| ||||||||| |||| ||||||||  | || |||||||||||||| ||||||| ||  |||||||||||||    
T  47914577 atatttttagggttatctcacttagcatttaatgctgcaattttggagccaaatttctaaggttaagttgttgc-aacctaataagattaaggagtaagg 47914675  T
Q  220 ga 221  Q
    ||    
T  47914676 ga 47914677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 48538621 - 48538558
Alignment:
Q  157 cagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaaggg 220  Q
    |||||||||||  |||  |||||||||||||  |||||||||||| ||| ||||||||||||||    
T  48538621 cagttttagagggaaatttttagggttaagtgattgctaacctaataacattaaggagtaaggg 48538558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 1663567 - 1663618
Alignment:
Q  170 aaaaatttagggttaagttgttgctaacctaacaactttaaggagtaaggga 221  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1663567 aaaaaattagggttaagttgttgctaacctaacaactttaaggagtaaggga 1663618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 16032613 - 16032689
Alignment:
Q  141 ttagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaag 218  Q
    |||||||| ||||||||| |||| ||||||||  | ||||||||||||||||| ||||||| ||  ||||||||||||    
T  16032613 ttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgc-aacctaataagattaaggagtaag 16032689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 34708283 - 34708216
Alignment:
Q  140 attagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaacttt 208  Q
    ||||||| | |||| |||| ||||||||| |||||| ||||||||||||||||| |||| |||||||||    
T  34708283 attagcaattaatgatgcatttttagagcaaaaaatctagggttaagttgttgc-aaccgaacaacttt 34708216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 56478907 - 56478986
Alignment:
Q  141 ttagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaaggga 221  Q
    |||||||| | ||||||| |||| ||||||||  | ||||||||||||||||| ||||||| ||  |||||||||||||||    
T  56478907 ttagcatttagtgctgcaattttggagccaaatttctagggttaagttgttgc-aacctaataagattaaggagtaaggga 56478986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 193
Target Start/End: Complemental strand, 52683213 - 52683130
Alignment:
Q  111 taggagggaaatatttttag-gttaacctcattagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgc 193  Q
    |||||||||||||||||| | |||||||| ||||||||| |||||| |    |||||||||||| ||||||||| ||| |||||    
T  52683213 taggagggaaatatttttggagttaacctaattagcatttaatgctaccaaattagagccaaaattttagggtttagtggttgc 52683130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 50233042 - 50233088
Alignment:
Q  175 tttagggttaagttgttgctaacctaacaactttaaggagtaaggga 221  Q
    |||||||||||||  |||||||||||| ||| |||||||||||||||    
T  50233042 tttagggttaagtgattgctaacctaataacattaaggagtaaggga 50233088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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