View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15938_high_35 (Length: 241)
Name: NF15938_high_35
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15938_high_35 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 3262747 - 3262524
Alignment:
| Q |
18 |
atgtatacatgcataatctcttaaaagtgtattcacagaatgaaaattagccaaagaagtcacaaacagaattaaaacactaaataaatacatgggaggt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3262747 |
atgtatacatgcataatctcttaaaagtgtattcacagaatgaaaattagccaaagaagtcacaaacagaattaaaacactaaataaatacatgggaggt |
3262648 |
T |
|
| Q |
118 |
taaaatatgcatcgattaattcagtatctttactaaatcatatttaaatttatccttctaacctataatataaatactaatttatgtatttaaaattaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3262647 |
taaaatatgcatcgattaattcagtatctttactaaatcatatttaaatttatccttctaacctataatataaatactaatttatgtatttaaaattaat |
3262548 |
T |
|
| Q |
218 |
atatgtagttaacatcaataactt |
241 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
3262547 |
atatgtagttaacatcaataactt |
3262524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University