View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15938_high_6 (Length: 532)
Name: NF15938_high_6
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15938_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Original strand, 1933676 - 1934200
Alignment:
| Q |
1 |
cacattacaatttttctgtcactaattacactcaaacatgcctccatctcattaaccctacttgggtcttctagtctcctatctccgaacattttgtatg |
100 |
Q |
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| T |
1933676 |
cacattacaatttttctgtcactaattacactcaaacatgcctccatctcattaaccctacttgggtcttctagtctcctatctccgaacattttgtatg |
1933775 |
T |
|
| Q |
101 |
ataggtccaaggtacttaaaacatgatatttgtggtactttatgctaaaacttttctaataattcttgtgggatgcaatcaatcatggattttttgtttg |
200 |
Q |
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| T |
1933776 |
ataggtccaaggtacttaaaacatgatatttgtggtactttatgctaaaacttttctaataattcttgtgggatgcaatcaatcatggattttttgtttg |
1933875 |
T |
|
| Q |
201 |
ccaaaaaacaggctaatgtttgaatccatttgatggtacttaggcttgctaattaagtgatcaatttaaaataaactgtgggaacctaatattggtctgt |
300 |
Q |
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| T |
1933876 |
ccgaaaaacaggctaatgtttgaatccatttgatggtacttaggcttgctaattaagtgatcaatttaaaataaactgtgggaacctaatattggtctgt |
1933975 |
T |
|
| Q |
301 |
gtggacaacagcgaaggctttaaccttcaggcacatgatgggaggtgctaaggtaatacttgcctaaatcccttctgctatcacatggttatcatcacgc |
400 |
Q |
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| T |
1933976 |
gtggacaacagcgaaggctttaaccttcaggcacatgatgggaggtgctaaggtaatacttgcctaaatcccttctgctatcacatggttatcatcacgc |
1934075 |
T |
|
| Q |
401 |
tccatagcttgccccattgagagttgtgatacgagattgagtgaacaggcagggaaggctttgtctttcttattttaggaaccagagatctcagaggttt |
500 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1934076 |
tccatagcttaccccattgagagttgtcatacgagattgagtgaacaggcagggaaggctttgtctttcttattttaggaaccagagatctcagaggttt |
1934175 |
T |
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| Q |
501 |
gctccgaacaaagattgatgatgtc |
525 |
Q |
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| T |
1934176 |
gctccgaacaaagattgatcatgtc |
1934200 |
T |
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