View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15938_low_1 (Length: 1103)
Name: NF15938_low_1
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15938_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 548; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 529 - 1100
Target Start/End: Complemental strand, 14249782 - 14249211
Alignment:
| Q |
529 |
aagtagaatatttgttagtcaaattagggttaggttattgttatttttgagtgatgaagtccttgaattgaggagttcaattagagttagggttttccta |
628 |
Q |
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| T |
14249782 |
aagtagaatatttgttagtcaaattagggttaggttattgttatttttgagtgatgaagtccttgaattgaggagttcaattagagttagggttttccta |
14249683 |
T |
|
| Q |
629 |
ggtgggaaaactgattagggttttagaatatggtgaattatttgtttagtgattgaaggaaggaaagcatatggatgatgaataactagtgattgaagct |
728 |
Q |
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| T |
14249682 |
ggtgggaaaactgattagggttttagaagatggtgaattatttgtttagtgattgaaggaaggaaagcatatggatgatgaataactagtgattgaagct |
14249583 |
T |
|
| Q |
729 |
tgattggtatgcaaatgcgagcataatggaacagaatggaatgtgaagatcgaaccgggagtgatgagttgagttgttgcttctgtttctttttcctggt |
828 |
Q |
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| T |
14249582 |
tgattggtatgcaaatgcgagcgtaatggaacagaatggaatgtgaagatcgaaccgggagtgatgagttgagttgttgcttctgtttctttttcctggt |
14249483 |
T |
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| Q |
829 |
gggttttgaatttttatgacttttactttcctgattgagagtgaaagtttgggtattcatatcatagacttaagttaataagcaaaatgtgttaactgat |
928 |
Q |
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| T |
14249482 |
gggttttgaatttttatgacttttactttcctgattgagagtgaaagtttgggtattcatatcatagacttaagttaatgagcaaaatgtgttaactgat |
14249383 |
T |
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| Q |
929 |
gatgaattattgctccaattttattggagtttgattactttcagaatttcatgcttctttgcctccaattgagcattattgaagggattggggtcctttt |
1028 |
Q |
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| T |
14249382 |
gatgaattattgctccaattttattggagtttgattattttcagaatttcatgcttctttgcctccaattgagcattattgaagggattggggtcctttt |
14249283 |
T |
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| Q |
1029 |
gaagtggccatggttaggaatttggcatagctgttggtgagcttttgccttactttgttcttcatctcactc |
1100 |
Q |
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| T |
14249282 |
gaagtggccatggttaggaatttggcatggctgttggtgagcttttgccttactttgttcttcatttcactc |
14249211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 14250298 - 14250095
Alignment:
| Q |
17 |
cataaaccttttcttcaaccttctccttttattcttggtaaacgtttacgtgatgatgatggtgatgctgtttcggttgccgcacctactgctccgccgg |
116 |
Q |
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| T |
14250298 |
cataaaccttttcttcaaccttctccttttattcttggtaaacgtttacgtgatgatgatggtgatgctgtttcggttgccgcacctactgctccgccgg |
14250199 |
T |
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| Q |
117 |
ggttgtggcggccggattttgctcagctttggagctttgctgcggctgctcaaactccgccggaaggtttttctgtttctcagcataattcattgtttca |
216 |
Q |
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| T |
14250198 |
ggttgtggcggccggattttgctcagctttggagctttgctgcggctgctcaaactccgccggaaggtttttctgtttctcagcataattcattgtttca |
14250099 |
T |
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| Q |
217 |
tcat |
220 |
Q |
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|||| |
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| T |
14250098 |
tcat |
14250095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 171; E-Value: 3e-91
Query Start/End: Original strand, 293 - 475
Target Start/End: Complemental strand, 14250016 - 14249834
Alignment:
| Q |
293 |
ggctctatgggtgaagcttccgcggcgaggttagggaattatcttcctggtcatctgaatttgttggcttcattgtctggtgggaatggaaattctggtc |
392 |
Q |
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| T |
14250016 |
ggctctatgggtgaagcttccgcggcgaggttagggaattatcttcctggtcatctgaatttgttggcttcattgtctggtgggaatggaaattctggtc |
14249917 |
T |
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| Q |
393 |
gtggagatgatgaagatcgttgaaccggggaattccgtgttttctactttattcatgtttttagtatatatagatatgaatta |
475 |
Q |
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| T |
14249916 |
gtggagatgatgaagatcgttgaaacggggaattcggtgttttgtactttattcatgtttttagtatatatagatatgaatta |
14249834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 297 - 415
Target Start/End: Original strand, 51615349 - 51615467
Alignment:
| Q |
297 |
ctatgggtgaagcttccgcggcgaggttagggaattatcttcctggtcatctgaatttgttggcttcattgtctggtgggaatggaaattctggtcgtgg |
396 |
Q |
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| T |
51615349 |
ctatgggtgaagcttcagctgctagagttgggaattatcttcctggtcatctcaatttgcttgcttcgttgtctggtggacatggaaattctggtcggag |
51615448 |
T |
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| Q |
397 |
agatgatgaagatcgttga |
415 |
Q |
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| T |
51615449 |
agatgatgaacatcattga |
51615467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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