View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15938_low_10 (Length: 461)
Name: NF15938_low_10
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15938_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 45626031 - 45626472
Alignment:
| Q |
1 |
ctttcactggcggaataaaaaagccaggctcgaagtgccgagcaaacagaactgtaaaactcagattactcagtaaaccatttgagatcattataagata |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45626031 |
ctttcactggcagaataaaaaagccaggctcgaagtgccgagcaaacagaactgtaaaactcagattactcagtaaaccatttgagatcattataagata |
45626130 |
T |
|
| Q |
101 |
aaactacaagatgagttgaaaagtaaaggtgatcgcaaggatcatacttacccgataacaacaatgagaaagatttcaagtatggtattcttgacagcct |
200 |
Q |
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| T |
45626131 |
aaactacaagatgagttgaaaagtaaaggtgatcgcaaggatcatacttacccgataacaacaatgagaaagatttcaagtatggtattcttgacagcct |
45626230 |
T |
|
| Q |
201 |
ctaatgctgcgtctttctcctcaggagttttgatatcccccgagacaatgtcaattatcttcccaccaaatttttgctgcagaagc-aatatatttcatg |
299 |
Q |
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| T |
45626231 |
ctaatgctgcgtctttctcctcaggagttttgatatcccccgagacaatgtcaattatcttcccaccaaatttttgctgcagaagcaaatatatttcatg |
45626330 |
T |
|
| Q |
300 |
ttcattagaaagcaactttaacttgataaaaagctatattgacataactgaannnnnnnnnnnnnnnnnnaggagagaaaaagagtgaatgatgcataca |
399 |
Q |
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| T |
45626331 |
ttcattagaaagcaactttaacttgataaaaagctatattgacataactgca--gtgtgtgtgtgtgtgtaggagagaaaaagagtgaatgatgcataca |
45626428 |
T |
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| Q |
400 |
actaaggtacttgatgtggctgcaatcaacagagctaccgtagc |
443 |
Q |
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| T |
45626429 |
actaaggtacttgatgtggctgcaatcaacagagccaccgtagc |
45626472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 13 - 443
Target Start/End: Complemental strand, 12049388 - 12048952
Alignment:
| Q |
13 |
gaataaaaaagccaggctcgaagtgccgagcaaacagaactgtaaaactcagattactcagtaaaccatttgagatc----------attataagataaa |
102 |
Q |
| |
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|||||||||||||| ||||||||||| |||||||| |||||| ||||||||||| ||| ||| |||||||||||||| ||||| || | | |
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| T |
12049388 |
gaataaaaaagccatgctcgaagtgctgagcaaactgaactgcaaaactcagataacttagtcaaccatttgagatctccaaggaaaattatgtgacata |
12049289 |
T |
|
| Q |
103 |
actacaagatgagttgaaaagtaaaggtgatcgcaaggatcatacttacccgataacaacaatgagaaagatttcaagtatggtattcttgacagcctct |
202 |
Q |
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||| |||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||| |||| |||||||| ||||||||||| ||| |
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| T |
12049288 |
cttacccgatgagttgaaaagtagaggtgaacgcaaggatcatacttacccgatgacaacaatgagaaatgtttctagtatggtgttcttgacagcttct |
12049189 |
T |
|
| Q |
203 |
aatgctgcgtctttctcctcaggagttttgatatcccccgagacaatgtcaattatcttcccaccaaatttttgctgcagaagcaatatatttcatgttc |
302 |
Q |
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|||||||| |||||||||||||| ||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12049188 |
aatgctgcatctttctcctcaggtgttctgatatctcctgagacaatgtcaattatcttcccaccaaatttttgctgcagaagcaatatatttcatgttc |
12049089 |
T |
|
| Q |
303 |
attagaaagcaactttaacttgataaaaagctatattgacataactgaannnnnnnnnnnnnnnnnnaggagagaaaaagagtgaatgatgcatacaact |
402 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
12049088 |
attagaaagcaactttaactttataaaaagctatattgacataactgca----gtgtgtgtatgggtaggagagaaaaagagtgaatgatgcatacaact |
12048993 |
T |
|
| Q |
403 |
aaggtacttgatgtggctgcaatcaacagagctaccgtagc |
443 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
12048992 |
aagatacttgatgtggctgcaatcaacagagctaccgtagc |
12048952 |
T |
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