View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15938_low_12 (Length: 429)

Name: NF15938_low_12
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15938_low_12
NF15938_low_12
[»] chr4 (3 HSPs)
chr4 (9-413)||(44563374-44563778)
chr4 (179-314)||(44542175-44542310)
chr4 (179-325)||(44553498-44553644)


Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 9 - 413
Target Start/End: Original strand, 44563374 - 44563778
Alignment:
Q  9 gattattctgtcgtagattggtaaccatatcgttaggcttaacatcgtgaagatcgtgtaagaagctgcagggattttgaaatttgtgttgaaaaaggtt 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44563374 gatttttctgtcgtagattggtaaccatatcgttaggcttaacatcgtgaagatcgtgtaagaagctgcagggattttgaaatttgtgttgaaaaaggtt 44563473  T
Q  109 cggtcggattgaattgcttggaagactaacactgtgttttgttggattattgcaacgtagtagagtatgcctgaaacccaaattggtagaactcttacta 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44563474 cggtcggattgaattgcttggaagactaacactgtgttttgttggattattgcaacgtagtagagtatgcctgaaacccaaattggtagaactcttacta 44563573  T
Q  209 agcatttcacttcttccacttgttgtatactgcatagattccatggatcagatgcagaaccatcagggtttattttgtcttgttgggttataatagcagc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44563574 agcatttcacttcttccacttgttgtatactgcatagattccatggatcagatgcagaaccatcagggtttattttgtcttgttgggttataatagcagc 44563673  T
Q  309 tttgtcaaggaacctgttaattcatacgaatattttagaactaacccattctatgaataaatcagcaaagggtaagattgcatttgcaaaagtaaagtta 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44563674 tttgtcaaggaacctgttaattcatacgaatattttagaactaacccattctatgaataaatcagcaaagggtaagattgcatttgaaaaagtaaagtta 44563773  T
Q  409 aggag 413  Q
    |||||    
T  44563774 aggag 44563778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 179 - 314
Target Start/End: Original strand, 44542175 - 44542310
Alignment:
Q  179 ctgaaacccaaattggtagaactcttactaagcatttcacttcttccacttgttgtatactgcatagattccatggatcagatgcagaaccatcagggtt 278  Q
    |||||| ||| || |||| |||||| || || |||||||  ||||||||||||||||| ||||| ||| |||||||||||| ||| |||||||| || ||    
T  44542175 ctgaaaaccatataggtaaaactctcaccaaacatttcaactcttccacttgttgtatgctgcaaagactccatggatcagctgctgaaccatctggatt 44542274  T
Q  279 tattttgtcttgttgggttataatagcagctttgtc 314  Q
    |||||||||||||   ||||| || |||||||||||    
T  44542275 tattttgtcttgtgatgttatcattgcagctttgtc 44542310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 325
Target Start/End: Original strand, 44553498 - 44553644
Alignment:
Q  179 ctgaaacccaaattggtagaactcttactaagcatttcacttcttccacttgttgtatactgcatagattccatggatcagatgcagaaccatcagggtt 278  Q
    |||||||||| || ||||  ||||| |  |||||||| || ||||||||||| || | |||||||||||||||||||||||| ||||| || |  || ||    
T  44553498 ctgaaacccatatgggtaacactctcaacaagcatttgacctcttccacttgctgcaaactgcatagattccatggatcagaagcagatccgttgggatt 44553597  T
Q  279 tattttgtcttgttgggttataatagcagctttgtcaaggaacctgt 325  Q
    |||||  |||||| |||| || || || ||||||||||| |||||||    
T  44553598 tatttgatcttgtggggtcatgattgctgctttgtcaagaaacctgt 44553644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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