View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15938_low_13 (Length: 406)
Name: NF15938_low_13
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15938_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 6 - 394
Target Start/End: Complemental strand, 41304565 - 41304183
Alignment:
| Q |
6 |
agttgtaacaaatgagtgtagaaaccttaaaaaatatggcagaaaaatgcaacaatgttaatgggtnnnnnnnnntacaatacttattgcttgaagtcaa |
105 |
Q |
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| T |
41304565 |
agttgtaaaaaatgagtgtagaaaccttaaaaaatatggcagaaaaatgaaacaatgttgacgggtaaaaaaaaataccatacttattgcttgaagtcaa |
41304466 |
T |
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| Q |
106 |
ataagtgtagaaacattcgagccatccatgatttgagaccaacatttttcnnnnnnnnnnnnttcacannnnnnncagttatgaatgaaatagggaagaa |
205 |
Q |
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| T |
41304465 |
atgagtgtagaaacattttagccatccatgatttgagaccaacatttttcaaaaacaaaaaattcacatttttt-cagttatgaatgaaatagggaagaa |
41304367 |
T |
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| Q |
206 |
agttggtgagtgaatatcgtaggtggaagaaaattgtatgaaatatgtaacatgtctgaaacggcagttaactgcgctgttgtacaacaaacaacaatta |
305 |
Q |
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| T |
41304366 |
agttggtgagtgaatatcgtaggtggaagaaagttgtatgaaatatgtaacatgattggaacggcagttaactgcgctgctgtacaacaaacaacaatta |
41304267 |
T |
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| Q |
306 |
acaaccgta---aacgaatgacagttaactgccattcatgataaaaggataatttttggatgtctgagagagcagataaggaagtctaaaga |
394 |
Q |
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| T |
41304266 |
attaccgtaaacaacgaatgacagttaa--------catgataaaaggataatttttggatgtctgagagagcagataaggaagcctaaaga |
41304183 |
T |
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