View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15938_low_14 (Length: 400)
Name: NF15938_low_14
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15938_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 20 - 387
Target Start/End: Original strand, 54106914 - 54107282
Alignment:
| Q |
20 |
gatatttgattggtttgttatgtttgtcaagtaggaatgacactaagcaatcatatcccattatttcggttacacttttccaccactcactttcatcaat |
119 |
Q |
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| T |
54106914 |
gatatttgattggtttgttatgtttgtcaagtaggaatgacactaagcaatcatatcccattatttcggttacacttttccaccactcactttcatcaat |
54107013 |
T |
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| Q |
120 |
gattgttaatgcatgaataaatgagttcattggtgttgatatttgttttggtgtactccatttatcgtaaatcatgtgtcgttcaagaaaataatgaaag |
219 |
Q |
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| T |
54107014 |
gattgttaatgcatgaataaatgagttcattggtgttgatatttgttttggtgtactccatttatcgtaaatcatgtgtcgttcaagaaaataatgaaag |
54107113 |
T |
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| Q |
220 |
taaagctggagaaaatatcaatcgattcattgaagaattgaaaattacacttaatttgaattaaatattttattgttaaaatggcaccaattttaaaaca |
319 |
Q |
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| T |
54107114 |
taaagctggagaaaatatcaatcgattcattgaagaattgaaaattacacttaatttgaattaaatattttattgttaaaatggcaccaattttaaaaca |
54107213 |
T |
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| Q |
320 |
aaatact-attattagcaaaaatacgtaagaaatttgtaggtcctgttgccactttctcatttcttctc |
387 |
Q |
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| T |
54107214 |
aaatactaattattagcaaaaatacgtaagaaacttgtaggtcctgttgccactttctcatttcttctc |
54107282 |
T |
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