View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15938_low_18 (Length: 353)

Name: NF15938_low_18
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15938_low_18
NF15938_low_18
[»] chr4 (18 HSPs)
chr4 (11-329)||(27475654-27475972)
chr4 (11-187)||(27514780-27514956)
chr4 (11-171)||(27503827-27503987)
chr4 (11-187)||(27468402-27468579)
chr4 (11-329)||(27524261-27524589)
chr4 (213-329)||(27514622-27514736)
chr4 (214-329)||(27468624-27468739)
chr4 (210-329)||(27508603-27508722)
chr4 (210-329)||(27503660-27503778)
chr4 (61-187)||(27497447-27497573)
chr4 (11-111)||(27508817-27508917)
chr4 (16-187)||(27478963-27479134)
chr4 (16-185)||(27486023-27486192)
chr4 (204-278)||(27497593-27497667)
chr4 (57-109)||(27489927-27489979)
chr4 (22-74)||(27526198-27526250)
chr4 (43-124)||(27506650-27506731)
chr4 (22-74)||(27476689-27476741)
[»] chr5 (1 HSPs)
chr5 (57-122)||(1754642-1754707)
[»] chr7 (1 HSPs)
chr7 (57-89)||(21477494-21477526)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 329
Target Start/End: Original strand, 27475654 - 27475972
Alignment:
Q  11 atgaaggttgattcaagtatgatacaggaactacaaaccgcgccaatttctctccaacatacacggcaacatagccctttttcacttctactgattttga 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27475654 atgaaggttgattcaagtatgatacaggaactacaaaccgcgccaatttctctccaacatacacggcaacatagccctttttcacttctactgattttga 27475753  T
Q  111 tgctgtttgtctagctgttaccgatcctcttagaatagagtttaaacggaaacccattttttgttattgtttgagagnnnnnnnnnnnnnnnntctcaaa 210  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||    
T  27475754 tgttgtttgtctagctgttaccgatcctcttagaatagagtttaaacggaaacccattttttgttattgtttgagagaaaaacaaataaaaaatctcaaa 27475853  T
Q  211 tgtaactaaatatttgatgatgccaatcagttgtgctgtttatgaaggagagaggaagtgtatttatagattttgaagttctctcaaaaccaaatttcaa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27475854 tgtaactaaatatttgatgatgccaatcagttgtgctgtttatgaaggagagaggaagtgtatttatagattttgaagttctctcaaaaccaaatttcaa 27475953  T
Q  311 gagaaactattattgaagg 329  Q
    |||||||||||||||||||    
T  27475954 gagaaactattattgaagg 27475972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 27514956 - 27514780
Alignment:
Q  11 atgaaggttgattcaagtatgatacaggaactacaaaccgcgccaatttctctccaacatacacggcaacatagccctttttcacttctactgattttga 110  Q
    |||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||| ||||||||||||||| |||||||||| ||||||||    
T  27514956 atgaaggttgattcaagtatgatacagggactacaaaccgcaccagtttctctccaacatacaccgcaacatagccctttctcacttctacagattttga 27514857  T
Q  111 tgctgtttgtctagctgttaccgatcctcttagaatagagtttaaacggaaacccattttttgttattgtttgagag 187  Q
    || || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27514856 tgttgcttgtctagctgttaccgatcctcttagaatagagtttaaacgaaaacccattttttgttattgtttgagag 27514780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 27503987 - 27503827
Alignment:
Q  11 atgaaggttgattcaagtatgatacaggaactacaaaccgcgccaatttctctccaacatacacggcaacatagccctttttcacttctactgattttga 110  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27503987 atgaaggttggttcaagtatgatacaggaactacaaaccgcgccaatttctctccaacatacacggaaacatagccctttttcacttctactgattttga 27503888  T
Q  111 tgctgtttgtctagctgttaccgatcctcttagaatagagtttaaacggaaacccattttt 171  Q
    || |||||||||||||||||| || ||  ||||||||| || |||||||||||||||||||    
T  27503887 tgttgtttgtctagctgttactgaaccctttagaatagtgtgtaaacggaaacccattttt 27503827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 27468402 - 27468579
Alignment:
Q  11 atgaaggttgattcaagtatgatacaggaactacaaaccgcgccaatttctctccaacatacacggcaacatagccctttttcacttctactgattttga 110  Q
    |||||||||| || |||||||||||||| |||||||||||| ||| |||||||||||||||||| ||||||||||||||| |||||||||| ||||||||    
T  27468402 atgaaggttggtttaagtatgatacagggactacaaaccgcaccagtttctctccaacatacaccgcaacatagccctttctcacttctacagattttga 27468501  T
Q  111 tgctgtttgtctagctgttaccgatcctcttagaatagagtttaaacggaaaccca-ttttttgttattgtttgagag 187  Q
    || || |||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||    
T  27468502 tgttgcttgtctagctgttaccgatcctcttagaatagagttgaaatggaaacccatttttttgttattgtttgagag 27468579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 11 - 329
Target Start/End: Complemental strand, 27524589 - 27524261
Alignment:
Q  11 atgaaggttgattcaagtatgatacaggaactacaaaccgcgccaatttctctccaacatacacggcaacatagccctttttcacttctactgattttga 110  Q
    |||||||||| ||||| ||||||||||||||||  ||||||| || |||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||    
T  27524589 atgaaggttggttcaaatatgatacaggaactatgaaccgcgtcagtttctctccaacatacactgcaacgtagccctttctcacttctacagattttga 27524490  T
Q  111 tgctgtttgtctagctgttaccgatcctcttagaatagagtttaaacggaaacccattttttgttattgtttgagagnnnnnnnnnnnnnnnntctcaaa 210  Q
    |  || ||| ||||  ||||| || ||  ||||||||| || ||||||||||||||||||||||||| |||||||||                |||||||    
T  27524489 ttttgcttgactagacgttactgaaccctttagaatagtgtgtaaacggaaacccattttttgttatagtttgagagaagaacagagaaaaaatctcaaa 27524390  T
Q  211 tg-----------taactaaatatttgatgatgccaatcagttgtgctgtttatgaaggagagaggaagtgtatttatagattttgaagttctctcaaaa 299  Q
    ||           |||||||||||||||| ||| |||| |||| | |||||| ||||||||||||||||| ||| |||||||||| |||||||||||||     
T  27524389 tgtatgaaggatgtaactaaatatttgataatg-caatgagtttttctgtttgtgaaggagagaggaagtttatatatagattttaaagttctctcaaac 27524291  T
Q  300 ccaaatttcaagagaaactattattgaagg 329  Q
    ||||||||||||| ||||||||||||||||    
T  27524290 ccaaatttcaagaaaaactattattgaagg 27524261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 213 - 329
Target Start/End: Complemental strand, 27514736 - 27514622
Alignment:
Q  213 taactaaatatttgatgatgccaatcagttgtgctgtttatgaaggagagaggaagtgtatttatagattttgaagttctctcaaaaccaaatttcaaga 312  Q
    |||||||||| |||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27514736 taactaaatacttgatgatgccaatgagttgtgct--ttatgaaggagagaggaagtgtatttatagattttgaagttctctcagaaccaaatttcaaga 27514639  T
Q  313 gaaactattattgaagg 329  Q
    |||||||||||||||||    
T  27514638 gaaactattattgaagg 27514622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 214 - 329
Target Start/End: Original strand, 27468624 - 27468739
Alignment:
Q  214 aactaaatatttgatgatgccaatcagttgtgctgtttatgaaggagagaggaagtgtatttatagattttgaagttctctcaaaaccaaatttcaagag 313  Q
    |||||||||||||||||||||||| |||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |     
T  27468624 aactaaatatttgatgatgccaatgagttgtcctgtttgtgaaggcgagaggaagtgtatttatagattttgaagttctctcaaaatcaaatttcaacaa 27468723  T
Q  314 aaactattattgaagg 329  Q
    ||||||||||||||||    
T  27468724 aaactattattgaagg 27468739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 210 - 329
Target Start/End: Complemental strand, 27508722 - 27508603
Alignment:
Q  210 atgtaactaaatatttgatgatgccaatcagttgtgctgtttatgaaggagagaggaagtgtatttatagattttgaagttctctcaaaaccaaatttca 309  Q
    |||||||||| || |||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||| |||| |     
T  27508722 atgtaactaagtaattgatgatgctaatgagttgtgctgtttgtgaaggagagaggaagtgtatttatagagtttgaagttatctcaaaacccaattcct 27508623  T
Q  310 agagaaactattattgaagg 329  Q
    ||| ||||||||||||||||    
T  27508622 agaaaaactattattgaagg 27508603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 210 - 329
Target Start/End: Complemental strand, 27503778 - 27503660
Alignment:
Q  210 atgtaactaaatatttgatgatgccaatcagttgtgctgtttatgaaggagagaggaagtgtatttatagattttgaagttctctcaaaaccaaatttca 309  Q
    |||||| ||| ||||||||||||| ||| | ||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||| |||| |     
T  27503778 atgtaattaagtatttgatgatgc-aatgaattgtgctgtttgtgaaggagagaggaagtgtatttatagagtttgaagttatctcaaaacccaattcct 27503680  T
Q  310 agagaaactattattgaagg 329  Q
    ||| ||||||||||||||||    
T  27503679 agaaaaactattattgaagg 27503660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 61 - 187
Target Start/End: Original strand, 27497447 - 27497573
Alignment:
Q  61 tctccaacatacacggcaacatagccctttttcacttctactgattttgatgctgtttgtctagctgttaccgatcctcttagaatagagtttaaacgga 160  Q
    |||||||||||||| |||||||||||||||   |||||||| |||||||||| || ||||||||| ||||| ||| | |||||| |||  | ||||||||    
T  27497447 tctccaacatacactgcaacatagccctttggaacttctacagattttgatgatgcttgtctagcagttactgatgcccttagagtagcatgtaaacgga 27497546  T
Q  161 aacccattttttgttattgtttgagag 187  Q
    ||||||||||| ||| |||||||||||    
T  27497547 aacccatttttagttcttgtttgagag 27497573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 27508917 - 27508817
Alignment:
Q  11 atgaaggttgattcaagtatgatacaggaactacaaaccgcgccaatttctctccaacatacacggcaacatagccctttttcacttctactgattttga 110  Q
    |||||||||| ||||| ||||| |||||||| ||||| |||| || |||||||||||||||||| ||||||||||||||| |||||||||  ||||||||    
T  27508917 atgaaggttggttcaaatatgacacaggaacgacaaaacgcgtcagtttctctccaacatacactgcaacatagccctttctcacttctatagattttga 27508818  T
Q  111 t 111  Q
    |    
T  27508817 t 27508817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 27478963 - 27479134
Alignment:
Q  16 ggttgattcaagtatgatacaggaactacaaaccgcgccaatttctctccaacatacacggcaacatagccctttttcacttctactgattttgatgctg 115  Q
    ||||| |||||||||||||  || || |||||||||  |  |||||||||||||||||| |||||||||||||||   |||||| ||||||||   ||||    
T  27478963 ggttggttcaagtatgatattgggacaacaaaccgcttctgtttctctccaacatacactgcaacatagccctttggaacttctgctgattttagagctg 27479062  T
Q  116 tttgtctagctgttaccgatcctcttagaatagagtttaaacggaaacccattttttgttattgtttgagag 187  Q
     ||| |||||||| |  ||| | | | |||||   ||||||||||||||||||||| || ||||||||||||    
T  27479063 cttggctagctgtgaatgatgcccgtcgaataacatttaaacggaaacccatttttggtgattgtttgagag 27479134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 27486023 - 27486192
Alignment:
Q  16 ggttgattcaagtatgatacaggaactacaaaccgcgccaatttctctccaacatacacggcaacatagccctttttcacttctactgattttgatgctg 115  Q
    ||||| |||||||||||||  || || |||||||||  |  |||||||||||||||||| |||||||||||||||   |||||| ||||||||   ||||    
T  27486023 ggttggttcaagtatgatattgggacaacaaaccgcttctgtttctctccaacatacactgcaacatagccctttggaacttctgctgattttagagctg 27486122  T
Q  116 tttgtctagctgttaccgatcctcttagaatagagtttaaacggaaacccattttttgttattgtttgag 185  Q
     ||| |||||||| |  ||| | | | |||||   ||||||||||||||||||||| || ||||||||||    
T  27486123 cttggctagctgtgaatgatgcccgtcgaataacatttaaacggaaacccatttttggtgattgtttgag 27486192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 27497593 - 27497667
Alignment:
Q  204 tctcaaatgtaactaaatatttgatgatgccaatcagttgtgctgtttatgaaggagagaggaagtgtatttata 278  Q
    ||||||||||||||||||| |||| ||||||||| | ||||| ||||| ||||||  |||||||| |||||||||    
T  27497593 tctcaaatgtaactaaatacttgaggatgccaatgaattgtgttgtttgtgaaggcaagaggaagcgtatttata 27497667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 27489979 - 27489927
Alignment:
Q  57 tttctctccaacatacacggcaacatagccctttttcacttctactgattttg 109  Q
    ||||||||||||||||||  |||||||||||||| | |||||| |||||||||    
T  27489979 tttctctccaacatacactacaacatagccctttcttacttctgctgattttg 27489927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 27526198 - 27526250
Alignment:
Q  22 ttcaagtatgatacaggaactacaaaccgcgccaatttctctccaacatacac 74  Q
    |||||||||||||||||||  |||||||||  || ||||||||||||||||||    
T  27526198 ttcaagtatgatacaggaatcacaaaccgcttcattttctctccaacatacac 27526250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 27506731 - 27506650
Alignment:
Q  43 acaaaccgcgccaatttctctccaacatacacggcaacatagccctttttcacttctactgattttgatgctgtttgtctag 124  Q
    |||||||||| |  ||||||||| ||||| || |||||||||||||||   ||| || ||||||||||||||| ||| ||||    
T  27506731 acaaaccgcgtctgtttctctccgacatatactgcaacatagccctttggaactcctgctgattttgatgctgcttggctag 27506650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 27476741 - 27476689
Alignment:
Q  22 ttcaagtatgatacaggaactacaaaccgcgccaatttctctccaacatacac 74  Q
    |||||||||||||||||||  |||||||||  || |||||| |||||||||||    
T  27476741 ttcaagtatgatacaggaatcacaaaccgcttcattttctcaccaacatacac 27476689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 1754707 - 1754642
Alignment:
Q  57 tttctctccaacatacacggcaacatagccctttttcacttctactgattttgatgctgtttgtct 122  Q
    ||||||||||| |||||| |||||||||||||||   ||||||||| |||| |||| || ||||||    
T  1754707 tttctctccaatatacactgcaacatagccctttggaacttctactaatttcgatgttgcttgtct 1754642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 21477494 - 21477526
Alignment:
Q  57 tttctctccaacatacacggcaacatagccctt 89  Q
    |||||||||||||||||| ||||||||||||||    
T  21477494 tttctctccaacatacactgcaacatagccctt 21477526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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