View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15938_low_21 (Length: 329)

Name: NF15938_low_21
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15938_low_21
NF15938_low_21
[»] chr3 (3 HSPs)
chr3 (22-314)||(25795440-25795729)
chr3 (95-180)||(15072711-15072796)
chr3 (242-274)||(28531019-28531051)
[»] scaffold0488 (1 HSPs)
scaffold0488 (93-156)||(2356-2419)
[»] chr8 (3 HSPs)
chr8 (246-283)||(11492038-11492075)
chr8 (246-275)||(33727838-33727867)
chr8 (282-314)||(9765968-9766000)
[»] chr1 (5 HSPs)
chr1 (287-317)||(32889360-32889390)
chr1 (287-317)||(47098969-47098999)
chr1 (287-317)||(47102986-47103016)
chr1 (70-123)||(22166118-22166171)
chr1 (287-315)||(47704083-47704111)
[»] scaffold0101 (1 HSPs)
scaffold0101 (250-279)||(43301-43330)
[»] chr2 (1 HSPs)
chr2 (246-275)||(21195641-21195670)
[»] chr6 (1 HSPs)
chr6 (287-323)||(5572735-5572771)
[»] chr5 (2 HSPs)
chr5 (287-315)||(31300743-31300771)
chr5 (246-274)||(32670593-32670621)


Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 22 - 314
Target Start/End: Original strand, 25795440 - 25795729
Alignment:
Q  22 attgcaccagttagtggcagctatgga-ctaagtcaaaacctagtactcctaagccattcaaatgaagtgaatttactggaacattaggggtatagccaa 120  Q
    ||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25795440 attgcaccatttagaggcagctatggaactaagtcaaaacctagtactcctaagccattcaaatgaagtgaatttactggaacatcaggggtatagccaa 25795539  T
Q  121 ttccacttcaagattggctctcaagaggttgattaagttacacaaacctgacattgttttgatacttgaaccctggctagattttacaaatttccttcta 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25795540 ttccacttcaagattggctctcaagaggttgattaagttacacaaacctgacattgttttgatacttgaaccctggctagattttacaaatttccttcta 25795639  T
Q  221 cttattannnnnnnnnnnnnngaataagctaaattagcccatccaaattgacactgaagagaaccaaaatctaagtgtagagcaacaccacaag 314  Q
    ||| ||               ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25795640 cttttt----tttttttttttgaataagctaaattagcccatccaaattgacaccgaagagaaccaaaatctaagtgtagagcaacaccacaag 25795729  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 15072711 - 15072796
Alignment:
Q  95 tactggaacattaggggtatagccaattccacttcaagattggctctcaagaggttgattaagttacacaaacctgacattgtttt 180  Q
    |||||||| || ||||| |||||||||||| | || |||||||||||||| ||||| || ||  | ||||| |||||| |||||||    
T  15072711 tactggaatataaggggaatagccaattccccctctagattggctctcaaaaggttaataaaacttcacaaccctgactttgtttt 15072796  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 28531019 - 28531051
Alignment:
Q  242 gaataagctaaattagcccatccaaattgacac 274  Q
    |||||||||||||||||||| ||||||||||||    
T  28531019 gaataagctaaattagcccacccaaattgacac 28531051  T

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Target: scaffold0488 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 2419 - 2356
Alignment:
Q  93 tttactggaacattaggggtatagccaattccacttcaagattggctctcaagaggttgattaa 156  Q
    |||| ||||| || ||||| |||||||||||| | ||||||||||||||||| |||||||||||    
T  2419 tttattggaatataaggggaatagccaattccccctcaagattggctctcaaaaggttgattaa 2356  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 11492038 - 11492075
Alignment:
Q  246 aagctaaattagcccatccaaattgacactgaagagaa 283  Q
    |||||||||||||||| |||||||||||||||||||||    
T  11492038 aagctaaattagcccacccaaattgacactgaagagaa 11492075  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 275
Target Start/End: Original strand, 33727838 - 33727867
Alignment:
Q  246 aagctaaattagcccatccaaattgacact 275  Q
    ||||||||||||||||||||||||||||||    
T  33727838 aagctaaattagcccatccaaattgacact 33727867  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 282 - 314
Target Start/End: Complemental strand, 9766000 - 9765968
Alignment:
Q  282 aaccaaaatctaagtgtagagcaacaccacaag 314  Q
    |||| ||||||||||||||||||||||||||||    
T  9766000 aacctaaatctaagtgtagagcaacaccacaag 9765968  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 317
Target Start/End: Original strand, 32889360 - 32889390
Alignment:
Q  287 aaatctaagtgtagagcaacaccacaagtat 317  Q
    |||||||||||||||||||||||||||||||    
T  32889360 aaatctaagtgtagagcaacaccacaagtat 32889390  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 317
Target Start/End: Complemental strand, 47098999 - 47098969
Alignment:
Q  287 aaatctaagtgtagagcaacaccacaagtat 317  Q
    |||||||||||||||||||||||||||||||    
T  47098999 aaatctaagtgtagagcaacaccacaagtat 47098969  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 317
Target Start/End: Complemental strand, 47103016 - 47102986
Alignment:
Q  287 aaatctaagtgtagagcaacaccacaagtat 317  Q
    |||||||||||||||||||||||||||||||    
T  47103016 aaatctaagtgtagagcaacaccacaagtat 47102986  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 22166171 - 22166118
Alignment:
Q  70 ctaagccattcaaatgaagtgaatttactggaacattaggggtatagccaattc 123  Q
    ||||||| |||||||||||||  ||||||||||| |||||||| |||| |||||    
T  22166171 ctaagcccttcaaatgaagtgcttttactggaaccttaggggtttagctaattc 22166118  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 287 - 315
Target Start/End: Complemental strand, 47704111 - 47704083
Alignment:
Q  287 aaatctaagtgtagagcaacaccacaagt 315  Q
    |||||||||||||||||||||||||||||    
T  47704111 aaatctaagtgtagagcaacaccacaagt 47704083  T

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Target: scaffold0101 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 279
Target Start/End: Original strand, 43301 - 43330
Alignment:
Q  250 taaattagcccatccaaattgacactgaag 279  Q
    ||||||||||||||||||||||||||||||    
T  43301 taaattagcccatccaaattgacactgaag 43330  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 275
Target Start/End: Original strand, 21195641 - 21195670
Alignment:
Q  246 aagctaaattagcccatccaaattgacact 275  Q
    ||||||||||||||||||||||||||||||    
T  21195641 aagctaaattagcccatccaaattgacact 21195670  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 287 - 323
Target Start/End: Complemental strand, 5572771 - 5572735
Alignment:
Q  287 aaatctaagtgtagagcaacaccacaagtattatcta 323  Q
    |||||||||||||||||||||||||||| || |||||    
T  5572771 aaatctaagtgtagagcaacaccacaagcataatcta 5572735  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 287 - 315
Target Start/End: Complemental strand, 31300771 - 31300743
Alignment:
Q  287 aaatctaagtgtagagcaacaccacaagt 315  Q
    |||||||||||||||||||||||||||||    
T  31300771 aaatctaagtgtagagcaacaccacaagt 31300743  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 274
Target Start/End: Original strand, 32670593 - 32670621
Alignment:
Q  246 aagctaaattagcccatccaaattgacac 274  Q
    |||||||||||||||||||||||||||||    
T  32670593 aagctaaattagcccatccaaattgacac 32670621  T

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