View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15938_low_25 (Length: 312)
Name: NF15938_low_25
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15938_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 37 - 150
Target Start/End: Complemental strand, 11665574 - 11665461
Alignment:
| Q |
37 |
cgactagatagcttgcaatcccttttgtccaagctccctgtaaagtgagtattcagctggtgtttatcctgattaagaaagaatggtgctattacagcag |
136 |
Q |
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| T |
11665574 |
cgactagatagcttgcaatcccttttgtcaaagctccctgtaaagtgagtattcagctggtgtttatcctgattaagaaaggatggtgctattacagcag |
11665475 |
T |
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| Q |
137 |
tgcaatgagtacct |
150 |
Q |
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||||||||| |||| |
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| T |
11665474 |
tgcaatgaggacct |
11665461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 193 - 298
Target Start/End: Complemental strand, 11663854 - 11663749
Alignment:
| Q |
193 |
ttgaaaggctatgatatgttgtaatcttcagatctttcaagtgttgatatgtttgtgcttttgtttgttaaagtatgaaagtttaagttgtttgtgataa |
292 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
11663854 |
ttgaaaggctatgacatgttgtaatcttcagatctttcaagtgttgatatgtttgtgctttcgtttgttaaagtatgaaagtttaagtgatttgtgataa |
11663755 |
T |
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| Q |
293 |
attgat |
298 |
Q |
| |
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| |||| |
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| T |
11663754 |
actgat |
11663749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 11664854 - 11664809
Alignment:
| Q |
151 |
attgtatgttcccatcctattttaattgtctttgctaattttttga |
196 |
Q |
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| T |
11664854 |
attgtatgttcccattctattttaattgtctttgctaattttttga |
11664809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 193 - 298
Target Start/End: Original strand, 21695025 - 21695130
Alignment:
| Q |
193 |
ttgaaaggctatgatatgttgtaatcttcagatctttcaagtgttgatatgtttgtgcttttgtttgttaaagtatgaaagtttaagttgtttgtgataa |
292 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
21695025 |
ttgaaaagctatgatatgttgtaatcttcagatctttcaagtgttgatatgtttgtgctttcgtttgttaaagtatgaaagtttaagtggtttgtgataa |
21695124 |
T |
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| Q |
293 |
attgat |
298 |
Q |
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| |||| |
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| T |
21695125 |
actgat |
21695130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 37 - 135
Target Start/End: Original strand, 21693201 - 21693299
Alignment:
| Q |
37 |
cgactagatagcttgcaatcccttttgtccaagctccctgtaaagtgagtattcagctggtgtttatcctgattaagaaagaatggtgctattacagca |
135 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
21693201 |
cgactagatagcttgcaatcccttttgtcaaagctccctgtaaagtgagtattcagctgttgtttaccctgattaagaaagaatggtgctattacagca |
21693299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 21693917 - 21693962
Alignment:
| Q |
151 |
attgtatgttcccatcctattttaattgtctttgctaattttttga |
196 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21693917 |
attgtatgttcccatcctattttaactgtctttgctaattttttga |
21693962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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