View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15938_low_3 (Length: 637)
Name: NF15938_low_3
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15938_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 15 - 621
Target Start/End: Original strand, 48501382 - 48501988
Alignment:
| Q |
15 |
caaaggagacgaatggtgaaaacaaggttgaagaaaatggagagagattctggtgtgtgcgagtctatgatccatgcaatgggctctggtttgagttttt |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48501382 |
caaaagagacgaatggtgaaaacaaggttgaagaaaatggagagagattctggtgtgtgcgagtctatgatccatgcaatgggctctggtttgagttttt |
48501481 |
T |
|
| Q |
115 |
gaagctgggatctagggcaagtgctatcgtgcgctgtgggtgagttggatatgatttcttggaggagttggagaaggagtgggaggaaattagggttttc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48501482 |
gaagctgggatctagggcaagtgctatcgtgcgctgtgggtgagttggatatgatttcttggaggagttggagaaggagtgggaggaaattagggttttc |
48501581 |
T |
|
| Q |
215 |
tgaagagagtgtgcatttctcggaaatccaaagaggtttttgagtgttgaatggatggaagccttgtaagaataccatgaaggttactaaggcttctgag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48501582 |
tgaagagagtgtgcatttctcggaaatccaaagaggtttttgagtgttgaatggatggaagccttgtaagaataccatgaaggttactaaggcttctgag |
48501681 |
T |
|
| Q |
315 |
tctgacccaaaagttcgctctgctttgagataaatagaacgagttgaatcgttttgtccatctctagcaagttcgaactttggtggtgagtcaaactcat |
414 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48501682 |
tctgacccagaagttcgctctgctttgagataaatagaacgagttgaatcgttatgtccatctctagcaagttcgaactttggtggtgagtcaaactcat |
48501781 |
T |
|
| Q |
415 |
aattcctccactctactgagttggggagttcagatatccatgaccaaatatccatattgatattgtatggtgtgttgttaacggaatatggattgaaaga |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48501782 |
aattcctccactctactgagttggggagttcagatatccatgaccaaatatccatattgatattgtatggtgtgttgttaacggaatatggattgaaaga |
48501881 |
T |
|
| Q |
515 |
ggattgagttaatggggttagttttaaggagagaatgaatgataatgtgattgccaacatggaaggattttgaagccatgaagagaagaggaacgggtgg |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48501882 |
ggattgagttaatggggttagttttaaggagagaatgaatgataatgtgattgccaacatggaaggattttgaagccatgaagagaagaggaacgggtgg |
48501981 |
T |
|
| Q |
615 |
ttgtaat |
621 |
Q |
| |
|
||||||| |
|
|
| T |
48501982 |
ttgtaat |
48501988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University