View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15938_low_30 (Length: 297)
Name: NF15938_low_30
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15938_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 142 - 282
Target Start/End: Original strand, 165015 - 165155
Alignment:
| Q |
142 |
ccatgaaccgagcagaatatgcatttgataccaacattttttctttgttccttttccttttacaaagtaaattgtgacgttatctttgggaaagtaaccc |
241 |
Q |
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| T |
165015 |
ccatgaaccgagcagaatatgcatttgataccaacattttttctttgttccttttccttttacaaagtaaattgtgacgttatctttgggaatacaaccc |
165114 |
T |
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| Q |
242 |
agacattctcctatcatgtacaaaatcttaactagcgttag |
282 |
Q |
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| T |
165115 |
agacattctcctatcatgtacaaaatctcaactagcgttag |
165155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 164847 - 164952
Alignment:
| Q |
37 |
tatctttgtagttttttccaaggagaataaggagagagnnnnnnnnggaaagtgtgcatttaaaacaatattttcccataataacattgattgatggacc |
136 |
Q |
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| T |
164847 |
tatctttgtacttttttccaaggagaataaggagaga---aaaaaaggaaagtgtgcatttaaaacaatattttcccataataacattgattgatggacc |
164943 |
T |
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| Q |
137 |
gcaatccat |
145 |
Q |
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| T |
164944 |
gcaatccat |
164952 |
T |
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