View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15938_low_33 (Length: 278)
Name: NF15938_low_33
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15938_low_33 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 38610521 - 38610331
Alignment:
| Q |
18 |
cataaaagatcctaagaattccaagaagatgattgaaggtatatctatcatgggcaactcaagcacaatttttaattgaatatttaacctttttgtagga |
117 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
38610521 |
cataaaagatcctgagaattccaagaagatgattgaaggtatatctatcatgggcaa-------------------tgaatatttaacctttttgaagga |
38610441 |
T |
|
| Q |
118 |
aagaccttaattactaattgcgttgagttcaaatttcgcatgcggttgtaaaataattattaatgtcactttagtcatgaccctccacctcttcccacac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38610440 |
aagaccttaattactaattgcgttgagttcaaattccgcatgcggttgtaaaatgattattaaagtcactttagtcatgaccctccacctcttcccacac |
38610341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 190
Target Start/End: Original strand, 30570175 - 30570203
Alignment:
| Q |
162 |
gttgtaaaataattattaatgtcacttta |
190 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
30570175 |
gttgtaaaataattattaatgtcacttta |
30570203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University