View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15938_low_37 (Length: 264)
Name: NF15938_low_37
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15938_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 54967846 - 54968076
Alignment:
| Q |
18 |
aagggaacatttagttcaaaagttaggatgtctttggcttcaaatcacccgatgtttcatatgagtgctactcttatagaattgaccctcatcaaaatgc |
117 |
Q |
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| T |
54967846 |
aagggaacatttagttcaaaagttaggatgtctttggcttcaaatcacccgatgtttcatatgagtgctactcttatagaattgaccctcatcaaaatgc |
54967945 |
T |
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| Q |
118 |
atattaagcctagtgcagctaccataagtatgctagtttaaggatggtagtgttaaaatgctgtttcttcaattcatgaggtaatgactagtgttgaaaa |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
54967946 |
atattaagcctagtgcggctaccataagtatgctagtttaaggatggtagtgttaaaatgttgtttcttcaattcatgaggtaatgactagtgttgaaaa |
54968045 |
T |
|
| Q |
218 |
gcgatggtaatgatggattgctgtttcttca |
248 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
54968046 |
gcgatggtaatgatggattgctgtttcttca |
54968076 |
T |
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