View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15938_low_40 (Length: 249)
Name: NF15938_low_40
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15938_low_40 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 29473831 - 29474045
Alignment:
| Q |
18 |
catggtacacatcagtactccaatgtatttcctcttctgagtcggaataaatatgttttcgaaccctttctttcaaattaaaa-gtctatgttcctgtgc |
116 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29473831 |
catggtacacatcggtactccaatgtatttcctcttctgaatcgaaataaatatgttttcgaaccctttctttcaaattaaaaagtctatgttcctgtgc |
29473930 |
T |
|
| Q |
117 |
ggatctcagcaattacttgttctgattttacatattgatcatcttgaactgatagaaaactttttggtggaataatcacgtgacacatgtatttcttttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29473931 |
ggatctcagcaattacttgttctgattttacatattgatcatcttgaactgatagaaaactttttggtggaataatcacgtgacacatgtatttgttttt |
29474030 |
T |
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| Q |
217 |
tgcagggatggcttc |
231 |
Q |
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||||||||||||||| |
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| T |
29474031 |
tgcagggatggcttc |
29474045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 29468717 - 29468931
Alignment:
| Q |
18 |
catggtacacatcagtactccaatgtatttcctcttctgagtcggaataaatatgttttcgaaccctttctttcaaattaaaa-gtctatgttcctgtgc |
116 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29468717 |
catggtacacatcggtactccaatgtatttcctcttctgaatcgaaataaatatgttttcgaaccctttctttcaaattaaaaagtctatgttcctgtgc |
29468816 |
T |
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| Q |
117 |
ggatctcagcaattacttgttctgattttacatattgatcatcttgaactgatagaaaactttttggtggaataatcacgtgacacatgtatttcttttt |
216 |
Q |
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| T |
29468817 |
ggatctcagcaattacttgttctgattttacatatttatcatcttgaactgatagaaaacattttggtggaataatcacgtgacacatgtatttcttttt |
29468916 |
T |
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| Q |
217 |
tgcagggatggcttc |
231 |
Q |
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| T |
29468917 |
tgcagggatggcttc |
29468931 |
T |
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Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 18148272 - 18148451
Alignment:
| Q |
18 |
catggtacacatcagtactccaatgtatttcctcttctgagtcggaataaatatgttttcgaaccctttctttcaaattaaaagtctatgttcctgtgcg |
117 |
Q |
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||||||||||||| ||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| |
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| T |
18148272 |
catggtacacatcggtactccaatgcatttccccttctgagtcagaataaatatgttttcgaaccctttctttcaaattaaaagtagatgttcccgcgcg |
18148371 |
T |
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| Q |
118 |
gatctcagcaattacttgttctgattttacatattgatcatcttgaactgatagaaaactttttggtggaataatcacgt |
197 |
Q |
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| T |
18148372 |
gatctcagcaatcacttgttctgattttacatattgatcattttgaactaatagaaaactttttggtggaataatcacgt |
18148451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 17512007 - 17512186
Alignment:
| Q |
18 |
catggtacacatcagtactccaatgtatttcctcttctgagtcggaataaatatgttttcgaaccctttctttcaaattaaaagtctatgttcctgtgcg |
117 |
Q |
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||||||||||||| ||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| |
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| T |
17512007 |
catggtacacatcggtactccaatgcatttccccttctgagtcagaataaatatgttttcgaaccctttctttcaaattaaaagtagatgttcccgcgcg |
17512106 |
T |
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| Q |
118 |
gatctcagcaattacttgttctgattttacatattgatcatcttgaactgatagaaaactttttggtggaataatcacgt |
197 |
Q |
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| T |
17512107 |
gatctcagcaatcacttgttctgattttacatattgatcattttgaactaatagaaaactttttggtggaataatcacgt |
17512186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 226690 - 226550
Alignment:
| Q |
18 |
catggtacacatcagtactccaatgtatttcctcttctgagtcggaataaatatgttttcgaaccctttctttcaaattaaaagtctatgttcctgtgcg |
117 |
Q |
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||||||| |||||||||||||| || ||||| | ||||| || ||||||||||| ||| | ||||||||||| |||| ||||| | ||||| | || |
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| T |
226690 |
catggtaaacatcagtactccagtgcatttcgccgtctgattcagaataaatatgcttttgtaccctttctttaaaatgtaaagtggacgttccggcacg |
226591 |
T |
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| Q |
118 |
gatctcagcaattacttgttctgattttacatattgatcat |
158 |
Q |
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| T |
226590 |
aatctccgcaattacttgttcagattttacatattgatcat |
226550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 36798593 - 36798529
Alignment:
| Q |
18 |
catggtacacatcagtactccaatgtatttcctcttctgagtcggaataaatatgttttcgaacc |
82 |
Q |
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||||||||||||| ||||||||||| |||||| |||||||||| ||||||||||||||||||||| |
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| T |
36798593 |
catggtacacatcggtactccaatgcatttccccttctgagtcagaataaatatgttttcgaacc |
36798529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 45212571 - 45212626
Alignment:
| Q |
139 |
tgattttacatattgatcatcttgaactgatagaaaactttttggtggaataatca |
194 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
45212571 |
tgattttacatattgatcattttgaactaatagaaaactttttggtggaataatca |
45212626 |
T |
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