View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15938_low_41 (Length: 247)
Name: NF15938_low_41
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15938_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 233
Target Start/End: Original strand, 1669795 - 1670011
Alignment:
| Q |
17 |
aattgacagggcacaaaaaacccttgtacttgggaagcacgtagagggtgatagtaatgtttcttttaagcttgttgaatttaatcaattagagtgtaga |
116 |
Q |
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| T |
1669795 |
aattgacaaggcacaaaaaacccttgtacttgggaagcaagtagagggtgatagtaatgtctcttttaagcttgttgaatttaatcaattagagtgtaga |
1669894 |
T |
|
| Q |
117 |
atggagcttgccaagatgattatcattgatgaacttccctttaaacatgttgaaggtgttggatttaaaggttttatgagtcgtgctcaacctcgtttga |
216 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1669895 |
atggagcttgctaagatgattatcattgatgaacttccctttaaacatgttgaaggtgttggatttaaaggttttatgagtcgtgctcaacctcgtttga |
1669994 |
T |
|
| Q |
217 |
aaattcctagtcgtgtc |
233 |
Q |
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||||||||||||||||| |
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| T |
1669995 |
aaattcctagtcgtgtc |
1670011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 44272684 - 44272468
Alignment:
| Q |
17 |
aattgacagggcacaaaaaacccttgtacttgggaagcacgtagagggtgatagtaatgtttcttttaagcttgttgaatttaatcaattagagtgtaga |
116 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44272684 |
aattgacaaggcacaaaaaacccttgtacttgggaagcaagtagagggtgatagtaatgtctcttttaagcttgttgaatttaatcaattagagtgtaga |
44272585 |
T |
|
| Q |
117 |
atggagcttgccaagatgattatcattgatgaacttccctttaaacatgttgaaggtgttggatttaaaggttttatgagtcgtgctcaacctcgtttga |
216 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44272584 |
atggagcttgctaagatgattatcattgatgaacttccctttaaacatgttgaaggtgttggatttaaaggttttatgagtcgtgctcaacctcgtttga |
44272485 |
T |
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| Q |
217 |
aaattcctagtcgtgtc |
233 |
Q |
| |
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||||||||||||||||| |
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| T |
44272484 |
aaattcctagtcgtgtc |
44272468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 26073908 - 26073691
Alignment:
| Q |
17 |
aattgacagggcacaaaaaa-cccttgtacttgggaagcacgtagagggtgatagtaatgtttcttttaagcttgttgaatttaatcaattagagtgtag |
115 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
26073908 |
aattgacaaggcacaaaaaaacccttgtacttgggaagcaagtagagggtgatagtaatgtctcttttaaacttgttgaatttaatcaattagagtgtag |
26073809 |
T |
|
| Q |
116 |
aatggagcttgccaagatgattatcattgatgaacttccctttaaacatgttgaaggtgttggatttaaaggttttatgagtcgtgctcaacctcgtttg |
215 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26073808 |
aatggagcttgctaagatgattatcattgatgaacttccctttaaacatgttgaaggtgttggatttaaaggttttatgagtcgtgctcaacctcgtttg |
26073709 |
T |
|
| Q |
216 |
aaaattcctagtcgtgtc |
233 |
Q |
| |
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|||||||||||||||||| |
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|
| T |
26073708 |
aaaattcctagtcgtgtc |
26073691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 20483728 - 20483785
Alignment:
| Q |
113 |
tagaatggagcttgccaagatgattatcattgatgaacttccctttaaacatgttgaa |
170 |
Q |
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|||| |||| ||||| || |||||||| |||||||| ||||| ||||||||||||||| |
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| T |
20483728 |
tagattggaacttgcaaaaatgattattattgatgagcttccttttaaacatgttgaa |
20483785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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