View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15938_low_45 (Length: 236)
Name: NF15938_low_45
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15938_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 39867464 - 39867665
Alignment:
| Q |
20 |
actagagcattctctagtttagaactttcataaaatgaattcctaatcctcctaaagggaggttagtcctatttacaggccatagaattagcagcaatta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39867464 |
actagagcattctctagtttagaactttcataaaatgaattcctaatcctcctaaagggaggttagtcctatttacaggccatagaattagcagcaatta |
39867563 |
T |
|
| Q |
120 |
aaacagaaagtttaacaaacttaacaactaactaacccctaatcaatctcttaacttcaatcctgacaaactcctttattctaagtcctaacaatttctg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39867564 |
aaacagaaagtttaacaaacttaacaactaactaacccctaatcaatctcttaacttcaatcctgacaaactcctttattctaagtcctaacagtttctg |
39867663 |
T |
|
| Q |
220 |
tg |
221 |
Q |
| |
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|| |
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|
| T |
39867664 |
tg |
39867665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 43832904 - 43833091
Alignment:
| Q |
36 |
gtttagaactttcataaaatgaattcctaatcctcctaaagggaggttagtcctatttacaggccatagaattagcagcaattaaaacagaaagtttaac |
135 |
Q |
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||||| ||||||||||||||| |||||| |||||||||| |||||||||||||||||||| |||||||| |||| |||||||||||||||||| ||||| |
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| T |
43832904 |
gtttacaactttcataaaatggattcctgatcctcctaatgggaggttagtcctatttacgggccataggattaacagcaattaaaacagaaaatttaaa |
43833003 |
T |
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| Q |
136 |
aaacttaacaactaactaacccctaatcaatctcttaacttcaatcctgacaaa--ctcctttattctaagtcctaacaatttctgtg |
221 |
Q |
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||||||||||||||||||||||||||| ||| |||||| ||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
43833004 |
aaacttaacaactaactaacccctaattaatttcttaatttcaatcctgacaaactctcctttattctaagtcctaacagtttctgtg |
43833091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 43009226 - 43009263
Alignment:
| Q |
20 |
actagagcattctctagtttagaactttcataaaatga |
57 |
Q |
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|||| |||||||||||||||| |||||||||||||||| |
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| T |
43009226 |
actaaagcattctctagtttacaactttcataaaatga |
43009263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 10870871 - 10870682
Alignment:
| Q |
23 |
agagcattctctagtttagaactttcataaaatgaattcctaatcctcctaaagggaggttagtcctatttacaggccatagaattagcagcaattaaaa |
122 |
Q |
| |
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|||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| | ||||| ||| |||||| |||| |
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| T |
10870871 |
agagcattttctagtttacaactttcataaaatgaattcctaatcgtcctaaagggaggttagtcccatttataaatcatagggttaacagcaagtaaag |
10870772 |
T |
|
| Q |
123 |
cagaaagtttaacaaacttaacaactaactaacccctaatcaatctcttaacttcaatcctgacaaact--cctttattctaagtcctaaca |
212 |
Q |
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|||||||| ||||||||||||||||| | || |||||||| || |||||||| ||||| ||| || || || |||||||||||||||||| |
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| T |
10870771 |
cagaaagtctaacaaacttaacaact-agtagcccctaattaacttcttaactccaatcttga-aagcttcccattattctaagtcctaaca |
10870682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 15909825 - 15909692
Alignment:
| Q |
20 |
actagagcattctctagtttagaactttcataaaatgaattcctaatcctcctaaagggaggttagtcctatttacaggccatag--aattagcagcaat |
117 |
Q |
| |
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||||||||||||||||||||| || |||||| |||||||||||||||||| |||||||||||| ||||||||||| | || |||| |||| || |||| |
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| T |
15909825 |
actagagcattctctagtttacaattttcattaaatgaattcctaatccttctaaagggaggtaagtcctatttataagcaataggagattaacatcaat |
15909726 |
T |
|
| Q |
118 |
taaaacagaaagtttaacaaacttaacaactaac |
151 |
Q |
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||| ||||||||| || |||||||||| |||||| |
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| T |
15909725 |
taagacagaaagtctaccaaacttaactactaac |
15909692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 181
Target Start/End: Complemental strand, 36118680 - 36118523
Alignment:
| Q |
23 |
agagcattctctagtttagaactttcataaaatgaattcctaatcctcctaaagggaggttagtcctatttacaggccatagaattagcagcaattaaaa |
122 |
Q |
| |
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|||||||| ||||||||| |||||||||||||||||||| ||||| |||||||||||| ||||||| ||||| | ||||| ||| ||||| ||| |
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| T |
36118680 |
agagcattttctagtttacaactttcataaaatgaattcataatcatcctaaagggagcttagtcccatttataaatcatagggttaatagcaagaaaag |
36118581 |
T |
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| Q |
123 |
cagaaagtttaacaaacttaacaactaactaacccctaatcaatctcttaacttcaatc |
181 |
Q |
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|||||||| ||||||||||||||||||| || |||||||| ||| |||||||| ||||| |
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| T |
36118580 |
cagaaagtctaacaaacttaacaactaa-tagcccctaattaatttcttaactccaatc |
36118523 |
T |
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