View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15938_low_6 (Length: 534)
Name: NF15938_low_6
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15938_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 12 - 514
Target Start/End: Original strand, 56326433 - 56326935
Alignment:
| Q |
12 |
atgaatcagcatggttgacaattaaatatgcaattgatgtgttaagaatagagatttgaaaccaaggaaaatcagaattgtagcaaattgatgtggagct |
111 |
Q |
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| T |
56326433 |
atgaatcagcatggttgacaattaaatatgcaattgatgtgttacgaatagagatttgaaaccaaggaaaatcagaattgtagcaaattgatttggagct |
56326532 |
T |
|
| Q |
112 |
gatcatgctaggcaaattgtgcaatacttcccctgatgatgtatataacggggcattatgaatttacagacaagactagtgaaattgcatatcgccaagg |
211 |
Q |
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| T |
56326533 |
gatcatgctaggcaaattgtgcaatacttcccctaatgatgtatataacggggcattatgaatttacagacaagactagtgaaattgcatatcgccaagg |
56326632 |
T |
|
| Q |
212 |
ctacatgcagcaaagaagctcgcggtacttgaatgcgcacataaatcggaaaagaaatgtgtggcaataatatctaatttgaaggtcggagaaacaaata |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
56326633 |
ctacatgcagcaaagaagctcgcggtacttgaatgcgcacataaattggaaaagaaatgtgtggcaataatatctaatttgaaggtcagagaaacaaata |
56326732 |
T |
|
| Q |
312 |
actactatactatgttttcctccaacaagatacattcctttagattctgtcagtttccaactctaaaacactactaaaagtccaaaaccaaaacttacca |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56326733 |
actactatactatgttttcctccaacaagatacattcctttagattctgtcagtttccaactctaaaacactactaaaagtccaaaaccaaaacttacca |
56326832 |
T |
|
| Q |
412 |
gataaatagttcttccttgaaattcaaactgagttctgattgcatctcttgtgagaccagcttcgggacccacaagaacacgatcttcttgcaacaatgt |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56326833 |
gataaatagttcttccttgaaattcaaactgagttctgattgcatctcttgtgagaccagcttcgggacccacaagaacacgatcttcttgcaacaatgt |
56326932 |
T |
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| Q |
512 |
att |
514 |
Q |
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| T |
56326933 |
att |
56326935 |
T |
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