View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15938_low_8 (Length: 506)
Name: NF15938_low_8
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15938_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 14 - 278
Target Start/End: Original strand, 14306012 - 14306276
Alignment:
| Q |
14 |
attattcttttgctagttgaaaattgaacaaatgtcttagannnnnnnncttcttgttgatgcaggtttcatattcacttttgatattcttttgtggaat |
113 |
Q |
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| T |
14306012 |
attattcttgtgctagttcaaaattgaacaaatgtcttgacttttttttcttcttgttgatacaggtttcatattcacttttgatattcttttgtggaat |
14306111 |
T |
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| Q |
114 |
gtttatcacagtagatggattcaacaaaactggaattccaagtgctttatgggagttgatggagccttattcacgagttgatcgttctagtggaatagca |
213 |
Q |
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| T |
14306112 |
gtttatcacagtaaatggattcaacaaaactggaattccaagtgctttatgggagatgatggagccttattcacgagttgatcgttctagtggaatagcg |
14306211 |
T |
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| Q |
214 |
atacttgctctcgttatatttgtcctatcaaatttggcctcaaatgtaccaactggtaagtgaat |
278 |
Q |
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| T |
14306212 |
atactttctctcgttatacttgtcctatcaaatttggcttcaaatgtaccaactggtaagtgaat |
14306276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 275 - 490
Target Start/End: Original strand, 14307659 - 14307879
Alignment:
| Q |
275 |
gaattatgtttgatagaaaattacaatcattgctccaaatatttcctcttcctatccttgagaattttagagttaaaaaatttagttatatc----tttg |
370 |
Q |
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| T |
14307659 |
gaattatgtttgatagaaaattacaatcattgctccaaatatttcctcttcctatctttgaaaattttacagtaaaataatttagttatatccatcttcg |
14307758 |
T |
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| Q |
371 |
gaggagatattt-gatctgatgtatcattgaccaatctcatgtttacatttttctagtactattgcttggagcaagagttgcagcctcggctgctgcaat |
469 |
Q |
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| T |
14307759 |
gaggagatattttgatcttatgtatcattgaccaatcttgtgtttacatttttctagtactattgcttggagcaagagttgcagcctcggctgctgcaat |
14307858 |
T |
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| Q |
470 |
ttcccaagaagatcagaaaag |
490 |
Q |
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||| ||||||||||||||||| |
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| T |
14307859 |
ttctcaagaagatcagaaaag |
14307879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 16400959 - 16400699
Alignment:
| Q |
18 |
ttcttttgctagttgaaaattgaacaaatgtcttagannnnnnnncttcttgttgatgcaggtttcatattcacttttgatattcttttgtggaatgttt |
117 |
Q |
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||||| ||||||||||| ||||||||||| ||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
16400959 |
ttcttgtgctagttgaagattgaacaaatatcttagaattttctttttcatgttgatacaggtttcatattcacttttgatattcttttgtggaatgttt |
16400860 |
T |
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| Q |
118 |
atcacagtagatggattcaacaaaactggaattccaagtgctttatgggagttgatggagccttattcacgagttgatcgttctagtggaatagcaatac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
16400859 |
atcacagtagatggattcaacaaaactggaattccaagtgctttatgggagttgatggagccttattcgcgagttgatcgttctagtggaatagcgatac |
16400760 |
T |
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| Q |
218 |
ttgctctcgttatatttgtcctatcaaatttggcctcaaatgtaccaactggtaagtgaat |
278 |
Q |
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| T |
16400759 |
ttgctcttgttatacttgtcctatcaaatttggcttcaaatgtaccaaccggtaagtgaat |
16400699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 275 - 490
Target Start/End: Complemental strand, 16400184 - 16399965
Alignment:
| Q |
275 |
gaattatgtttgatagaaaat----tacaatcattgctccaaatatttcctcttcctatccttgagaattttagagttaaaaaatttagttatatc---- |
366 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||| || ||||||||||||| ||| ||||| ||| |
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| T |
16400184 |
gaattatgtttgatagaaaataaattacaatcattgctccaaatatttcctctt----ttcttgaaaagtttagagttaaaacattaagttacatccatc |
16400089 |
T |
|
| Q |
367 |
tttggaggagatatttgatctgatgtatcattgaccaatctcatgtttacatttttctagtactattgcttggagcaagagttgcagcctcggctgctgc |
466 |
Q |
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||| ||| | || |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||| || || ||||| |
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| T |
16400088 |
tttagagcgttttttcgatctgatgtatcattgaccaatctcgtgtttacatttttatagtactattgcttggagcaagagtagcagcttcagcagctgc |
16399989 |
T |
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| Q |
467 |
aatttcccaagaagatcagaaaag |
490 |
Q |
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||||||||||||||| ||||||| |
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| T |
16399988 |
aatttcccaagaagacgagaaaag |
16399965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 384 - 457
Target Start/End: Complemental strand, 16397237 - 16397164
Alignment:
| Q |
384 |
atctgatgtatcattgaccaatctcatgtttacatttttctagtactattgcttggagcaagagttgcagcctc |
457 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
16397237 |
atctgatgtatcattgaccaatcttgtgtttacatttttctagtactattgcttggcgcaagagttgcagcctc |
16397164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 380 - 482
Target Start/End: Original strand, 15942565 - 15942667
Alignment:
| Q |
380 |
tttgatctgatgtatcattgaccaatctcatgtttacatttttctagtactattgcttggagcaagagttgcagcctcggctgctgcaatttcccaagaa |
479 |
Q |
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||||||||||||| |||||||||||||| || ||| |||||| ||||||||||||||| ||||||| ||||||| ||| ||||||| |||||||||| || |
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| T |
15942565 |
tttgatctgatgtgtcattgaccaatcttatatttgcattttactagtactattgctttgagcaagtgttgcagtctcagctgctgaaatttcccaataa |
15942664 |
T |
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| Q |
480 |
gat |
482 |
Q |
| |
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||| |
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| T |
15942665 |
gat |
15942667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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