View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15938_low_9 (Length: 502)
Name: NF15938_low_9
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15938_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Original strand, 30608690 - 30609180
Alignment:
| Q |
1 |
ctgcaacctcttctgtattctctgaaccgccaacaccatccatcatgccattattattctctactggtaatcagcaacaatcagaagaaacaacatctac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30608690 |
ctgcaacctcttctgtattctctgaaccgccaacaccatccatcatgccattattattctctactggtaatcagcatcaatcagaagaaacaacatctac |
30608789 |
T |
|
| Q |
101 |
tcaattgtcatacagttttggtgttaaaaagttgaatccagcagtagttttttccttcccttccacaagcaatacagttgataatgatgcaggagtcatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30608790 |
tcaattgtcatacagttttggtgttaaaaagttgaatccagcagtagttttttccttcccttccacaagcaatacagttgataatgatgcaggagtcatt |
30608889 |
T |
|
| Q |
201 |
aagtataactttggttcgaccgataagccaaggctgtcgttttcatttgaaaaaactgctgtcgactgttgagtcaaacgaacatgaggttccaaaaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30608890 |
aagtataactttggttcgaccgataacccaaggctgtcgttttcatttgaaaaaactgctgtcgactgttgagtcaaacgaacacgaggttccaaaaaat |
30608989 |
T |
|
| Q |
301 |
tgtccgaggtaattttcttttgttttaagaaaatggagttgttttggaacagaaaatgtggtgtttatgattcttatcctacttgtgtattttctttgta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30608990 |
tgtccgaggtaattttcttttgttttaagaaaatggagttgttttggaacagaaaatgtggtgtttatgattcttatcctacttgtgtattttctttgta |
30609089 |
T |
|
| Q |
401 |
caacgcatctcgttggaaaatattttggttatatgataagatcttttcttttgagaagatttttgtcataggacatgcaatcttgattcat |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30609090 |
caacgcatctcgttggaaaatattttggttatatgataagatcttttcttttgagaagatttttgtcataggacatgcaatcttgattcat |
30609180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 3 - 304
Target Start/End: Original strand, 12481602 - 12481902
Alignment:
| Q |
3 |
gcaacctcttctgtattctctgaaccgccaacaccatccatcatgccattattattctctactggtaatcagcaacaatcagaagaaacaacatctactc |
102 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||| || |
|
|
| T |
12481602 |
gcaacctcgtctgtattctctgaaccgccaacaccatccatcatgccattattattctcttctggtaatcagcaacaattagaagaaaca---tctaatc |
12481698 |
T |
|
| Q |
103 |
aattgtcatacagttttggtgttaaaaagttgaatccagcagtagttttttccttcccttccacaagcaatacagttgataatgatgcaggagtcattaa |
202 |
Q |
| |
|
|||||| |||||||||||| ||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
12481699 |
aattgttatacagttttggagttaaaatgtcaaatccagcagtagtcttttccttcccttccacaagcaatacagttgataatgatgctggagtcataaa |
12481798 |
T |
|
| Q |
203 |
gtataactttggttcgaccgataagccaaggctgtcgttttcatttgaaaaaactgctgtcgactgttgagtcaaacgaac--atgaggttccaaaaaat |
300 |
Q |
| |
|
||||||||||||||| | | ||| | ||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||| || |
|
|
| T |
12481799 |
gtataactttggttcaatcaatacggcaaggctgtcgttttcatttgaaaaaactgctgtcaactgttgagtaaaacgaacaaatgaggttccaaaagat |
12481898 |
T |
|
| Q |
301 |
tgtc |
304 |
Q |
| |
|
|||| |
|
|
| T |
12481899 |
tgtc |
12481902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 37 - 304
Target Start/End: Original strand, 12503066 - 12503332
Alignment:
| Q |
37 |
catccatcatgccattattattctctactggtaatcagcaacaatcagaagaaacaacatctactcaattgtcatacagttttggtgttaaaaagttgaa |
136 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||| |||||||| |||||||||||| ||||||| || || |
|
|
| T |
12503066 |
catccatcatgccattattattctcttctggtaatcagcaacaattagaagaaaca---tctaatcaattgttatacagttttggagttaaaatgtcaaa |
12503162 |
T |
|
| Q |
137 |
tccagcagtagttttttccttcccttccacaagcaatacagttgataatgatgcaggagtcattaagtataactttggttcgaccgataagccaaggctg |
236 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | | ||| | |||||||| |
|
|
| T |
12503163 |
tccagcagtagtcttttccttcccttccacaagcaatacagttgataatgatgctggagtcataaagtataactttggttcaatcaatacggcaaggctg |
12503262 |
T |
|
| Q |
237 |
tcgttttcatttgaaaaaactgctgtcgactgttgagtcaaacgaac--atgaggttccaaaaaattgtc |
304 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||| |||||| |
|
|
| T |
12503263 |
tcgttttcatttgaaaaaactgctgtcaactgttgagtaaaacgaacaaatgaggttccaaaagattgtc |
12503332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 22307940 - 22307999
Alignment:
| Q |
36 |
ccatccatcatgccattattattctctactggtaatcagcaacaatcagaagaaacaaca |
95 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||| |||||||| |||| |
|
|
| T |
22307940 |
ccatccatcattccattattattctctactggtaatcagtaacaattagaagaaaaaaca |
22307999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University