View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15939_high_3 (Length: 334)
Name: NF15939_high_3
Description: NF15939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15939_high_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 37 - 334
Target Start/End: Complemental strand, 43207110 - 43206813
Alignment:
| Q |
37 |
tcctaatttaaaagaacactaaatctcaaatctgtaattgcaagatcatgtggtgcttcaaatatggcagaaaatgaaaaaacccaaacccataacatag |
136 |
Q |
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| T |
43207110 |
tcctaatttaaaagaacactaaatctcaaatctgtaattgcaagatcatgtggtgcttcaaatatggcagaaaatgaaaaaacccaaacccataacatag |
43207011 |
T |
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| Q |
137 |
ttttcagattttttactgcactgctctttagttttagttagtttatttagaatgaacggtgcatgcaagttaattacttatagtttcatttgttaatact |
236 |
Q |
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| T |
43207010 |
ttttcagattttttactgcactgctctttagttttagttagtttatttagaatgaacggtgcatgcaagttaattacttatagtttcatttgttaatact |
43206911 |
T |
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| Q |
237 |
ttaataagctatatttatcagttaaaaaattgtattatgaattgagagaaatgaatgaatactcattgtttcattaattggaaaggttcagtacaaca |
334 |
Q |
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| T |
43206910 |
ttaataagctatacttatgagttaaaaaattgtattatgaattgagagaaatgaatgaatactcattgtttcattaattggaaaggttcagtacaaca |
43206813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 247
Target Start/End: Complemental strand, 43186484 - 43186277
Alignment:
| Q |
40 |
taatttaaaagaacactaaatctcaaatctgtaattgcaagatcatgtggtgcttcaaatatggcagaaaatgaaaaaacccaaacccataacatagttt |
139 |
Q |
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| T |
43186484 |
taatttataagaacaataaattctaaatctgtaatttcacaaacctgtggtgcctcaaacatggcaaaaaatgaaaaacccataaac---aacatagttt |
43186388 |
T |
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| Q |
140 |
tcagattttttactgcactgctctttagttttagttagtttatttagaatgaacg----gtgcatgcaagttaattacttatagtttcatttgttaatac |
235 |
Q |
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| T |
43186387 |
tcagatttttgactgcactgttctttagttttagtta-tttgttcagaatgaatgaatcgtaaatgcaagttaattgtttatagtttgttttgttcataa |
43186289 |
T |
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| Q |
236 |
tttaataagcta |
247 |
Q |
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| T |
43186288 |
tttaataagcta |
43186277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 307
Target Start/End: Original strand, 18835497 - 18835535
Alignment:
| Q |
269 |
tattatgaattgagagaaatgaatgaatactcattgttt |
307 |
Q |
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| T |
18835497 |
tattatgaattgagagaagtgaatgaatactcattgttt |
18835535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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