View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15939_high_4 (Length: 334)
Name: NF15939_high_4
Description: NF15939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15939_high_4 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 334
Target Start/End: Original strand, 4721740 - 4722064
Alignment:
| Q |
11 |
agaatatgaggatcttgattcttaattgcattcaaatgatatatgttcttcttttaacgtggtcctatcttcaacaaatgatacccgaatttcggcaact |
110 |
Q |
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| T |
4721740 |
agaatatgaggatcttgattcttaattgcattcgaatgatatatgttcttcttttaacatggtcttatcttcaacaaatgatacccgaatttcggcaact |
4721839 |
T |
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| Q |
111 |
ctggaaactcttcgttctgaaagctcaacttgagtaaaggctactggtgtacctttttcctctagcgaggaaagaagactttcttcctctaagcttctct |
210 |
Q |
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| T |
4721840 |
ctggaaactcttcgttctgaaagctcaacttgagtaaaggctactggtgtacctttttcctctagtgaggaaagaagactttcttcctctaagcttctct |
4721939 |
T |
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| Q |
211 |
tgt-gttgtcacccaaattatttgagccttgaaacaatggccccattaaaatatatgatgttgttgtccctaacgacaatcattttcctaaaatcagaca |
309 |
Q |
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| T |
4721940 |
tgtcgttgtcacccaaattatttgagccttgaaacaatggccccattaaagtatatgatgttgttgtccctaacgacaatcgttttcctaaaatcagaca |
4722039 |
T |
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| Q |
310 |
atatgtggtcatactatgtttttta |
334 |
Q |
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| T |
4722040 |
atatgttgtcatactatgtttttta |
4722064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 11 - 302
Target Start/End: Original strand, 54923708 - 54923999
Alignment:
| Q |
11 |
agaatatgaggatcttgattcttaattgcattcaaatgatatatgttcttcttttaacgtggtcctatcttcaacaaatgatacccgaatttcggcaact |
110 |
Q |
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|||| ||||||||||||||||||||||| ||| ||| ||||||||||||||||||| |||||||||||||||| || ||||||| | |||| |||||| |
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| T |
54923708 |
agaagatgaggatcttgattcttaattgtcttcgaataatatatgttcttcttttaatgtggtcctatcttcaataacagatacccaactttctgcaact |
54923807 |
T |
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| Q |
111 |
ctggaaactcttcgttctgaaagctcaacttgagtaaaggctactggtgtacctttttcctctagcgaggaaagaagactttcttcctctaagcttctct |
210 |
Q |
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| T |
54923808 |
ctggtaactcttccttctgagagctcaactaaagtaaaggctcttgctgtaccttctgccactagtgaggacataggactttcaacctttaagcttctct |
54923907 |
T |
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| Q |
211 |
tgt-gttgtcacccaaattatttgagccttgaaacaatggccccattaaaatatatgatgttgttgtccctaacgacaatcattttcctaaaa |
302 |
Q |
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| T |
54923908 |
tgtcctcgtcgctcaaact-tttgaccctaggaacaatggccccattcaagtatatgacgttgtcgtccccaatgacaatcattttcctaaaa |
54923999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 54916016 - 54916066
Alignment:
| Q |
36 |
ttgcattcaaatgatatatgttcttcttttaacgtggtcctatcttcaaca |
86 |
Q |
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| T |
54916016 |
ttgccttcaaataatacatgttcttcttttaaggtggtcctgtcttcaaca |
54916066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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