View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15939_high_5 (Length: 331)
Name: NF15939_high_5
Description: NF15939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15939_high_5 |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 165 - 318
Target Start/End: Complemental strand, 37823773 - 37823620
Alignment:
| Q |
165 |
caccaacccaagaaaggatccaaggttgaatgactcgaatctagaaaacccaaactctaaatcattattcaacaacattttagccaaattctgaaactac |
264 |
Q |
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| T |
37823773 |
caccaacccaagaaaggatccaaggttgaatgactcgaatctagaaaaccccaactctaaatcattattcaacaacattttagccaaattctaaaactac |
37823674 |
T |
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| Q |
265 |
cattgtcgaaattatcaagtaatggaacgagaaaaggagaagaattgatgttct |
318 |
Q |
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| T |
37823673 |
cattgtcgaaattatcaagtaatggaacgagaaaaggataagaattgatgttct |
37823620 |
T |
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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 37823937 - 37823865
Alignment:
| Q |
1 |
tcaacaacaaattataagcatttctcttttgctgaaaatcaaa-----atgttgaaatatcatgaaaactcca |
68 |
Q |
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| T |
37823937 |
tcaacaacaaattatatgcatttctcttttgctgaaaatcaaacaaagatgttgaaatatcatgaacactcca |
37823865 |
T |
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Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 33432762 - 33432837
Alignment:
| Q |
166 |
accaacccaagaaaggatccaaggttgaatgactcgaatctagaaaacccaaactctaaatcattattcaacaaca |
241 |
Q |
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| T |
33432762 |
accaacccaagaaacgatccaaggttgaatgactcgaatctagaaaaccccaactctatatcctgattcaagaaca |
33432837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 33432839 - 33432890
Alignment:
| Q |
267 |
ttgtcgaaattatcaagtaatggaacgagaaaaggagaagaattgatgttct |
318 |
Q |
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| T |
33432839 |
ttgtcgaaattatcaagtaatcaaaggagaaaagaagaagaattgatgttct |
33432890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 63943 - 64004
Alignment:
| Q |
166 |
accaacccaagaaaggatccaaggttgaatgactcgaatctagaaaacccaaactctaaatc |
227 |
Q |
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| T |
63943 |
accaacccaagaaaggattcaactttgaatgactcaaatctagaaaaccccaactctaaatc |
64004 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 316
Target Start/End: Complemental strand, 38490615 - 38490530
Alignment:
| Q |
231 |
attcaacaacattttagccaaattctgaaactaccattgtcgaaattatcaagtaatggaacgagaaaaggagaagaattgatgtt |
316 |
Q |
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| T |
38490615 |
attcaacaaccctttaaccaaattccaaaactacaattgttgaaattatcaagtaattgaaagagaaaagaagaataactgatgtt |
38490530 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 5021231 - 5021287
Alignment:
| Q |
231 |
attcaacaacattttagccaaattctgaaactaccattgtcgaaattatcaagtaat |
287 |
Q |
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| T |
5021231 |
attcaacaacacttaaaccaaattccaaaactaccattgtcgaaattttcaagtaat |
5021287 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 316
Target Start/End: Original strand, 27391001 - 27391085
Alignment:
| Q |
231 |
attcaacaacattttagccaaattctgaaactaccattgtcgaaattatcaagtaatggaacgagaaaaggagaagaattgatgtt |
316 |
Q |
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| T |
27391001 |
attcaacaacattttaaccaaattccaaaactaccgtgttcgaaattatctagttatcg-acgagaggagaagaagaattgatgtt |
27391085 |
T |
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