View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15939_high_6 (Length: 328)
Name: NF15939_high_6
Description: NF15939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15939_high_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 328
Target Start/End: Original strand, 43794289 - 43794607
Alignment:
| Q |
10 |
aagaatatacagactaaacaatcattttacaactgagttgaataatatacagtctaaatgacaaatcaccaaacaactgagataaaattgaggggaaata |
109 |
Q |
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| T |
43794289 |
aagaaaatacagactaaacaatcattttacaactgagttgaataatatacagtctaaatgacaaatcaccaaacaactgagataaaattgaggggaaata |
43794388 |
T |
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| Q |
110 |
ttgatagagtaaatactccaaatctcaatgtaacagacacttttatgtaaagtaacaaacagataagtggttaaataacnnnnnnnnnnnnnnnnttgag |
209 |
Q |
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| T |
43794389 |
ttgatagagtaaatactccaaatctcaatgtaacagacacttttatgtaaagtaacaaccagataagtggttaaataacaaaacaaaacaaaaaattgag |
43794488 |
T |
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| Q |
210 |
tagtgtataagagggcctagactacataaatagtaacgtgaaaacaaactctcccatttcatcagtatgaagcatagagaaaatacaggtggaacctata |
309 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43794489 |
tagtgtataagagggcctagactacataaatattaacgtgaaaacaaactctcccatttcatcagtatgaagcatagagaaaatacaggtggaacctata |
43794588 |
T |
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| Q |
310 |
taatatacaatgatattta |
328 |
Q |
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| T |
43794589 |
taatatacaatgatattta |
43794607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 26715983 - 26715933
Alignment:
| Q |
53 |
aatatacagtctaaatgacaaatcaccaaacaactgagataaaattgaggg |
103 |
Q |
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| T |
26715983 |
aatatacagtctaaatgacaaattaccaaacaattgagataaaattgaggg |
26715933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 26985723 - 26985673
Alignment:
| Q |
53 |
aatatacagtctaaatgacaaatcaccaaacaactgagataaaattgaggg |
103 |
Q |
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||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
26985723 |
aatatacagtctaaatgacaaattaccaaacaattgagataaaattgaggg |
26985673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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