View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15939_low_1 (Length: 378)
Name: NF15939_low_1
Description: NF15939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15939_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 163 - 370
Target Start/End: Complemental strand, 33550454 - 33550247
Alignment:
| Q |
163 |
tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33550454 |
tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag |
33550355 |
T |
|
| Q |
263 |
gtattttagtagcgcaaaatacttccctgaacattataactttaaaaagattatttccgtagtatccaaaaataatgtcaacattgtctggaaaatgatg |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33550354 |
gtattttagtagcgcaaaatacttccctgaacattataactttaaaaagattatttccgtagtatccaaaaataatgtcaacattgtttggaaaatgatg |
33550255 |
T |
|
| Q |
363 |
atattgtt |
370 |
Q |
| |
|
|||||||| |
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|
| T |
33550254 |
atattgtt |
33550247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 163 - 370
Target Start/End: Complemental strand, 26230829 - 26230621
Alignment:
| Q |
163 |
tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26230829 |
tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag |
26230730 |
T |
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| Q |
263 |
gtattttagtagcgcaaaatacttccctgaacattataactttaaaaag-attatttccgtagtatccaaaaataatgtcaacattgtctggaaaatgat |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26230729 |
gtattttagtagcgcaaaatacttccctgaacattataactttaaaaagaattatttccgtagtatccaaaaataatgtcaacattgtctggaaaatgat |
26230630 |
T |
|
| Q |
362 |
gatattgtt |
370 |
Q |
| |
|
||||||||| |
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|
| T |
26230629 |
gatattgtt |
26230621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 26230983 - 26230909
Alignment:
| Q |
10 |
catcatcacaacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct |
84 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26230983 |
catcatcacaacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct |
26230909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 33550607 - 33550533
Alignment:
| Q |
10 |
catcatcacaacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct |
84 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33550607 |
catcatcacaacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct |
33550533 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 163 - 370
Target Start/End: Original strand, 8335378 - 8335585
Alignment:
| Q |
163 |
tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag |
262 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8335378 |
tgataatgtaccttgattggagtgttgaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag |
8335477 |
T |
|
| Q |
263 |
gtattttagtagcgcaaaatacttccctgaacattataactttaaaaagattatttccgtagtatccaaaaataatgtcaacattgtctggaaaatgatg |
362 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8335478 |
gtattttagtagcgcaaaaaacttccctgaacattataactttaaaaagattatttccatagtatccaaaaataatgtcaacattgtctggaaaatgatg |
8335577 |
T |
|
| Q |
363 |
atattgtt |
370 |
Q |
| |
|
|||||||| |
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|
| T |
8335578 |
atattgtt |
8335585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 8335224 - 8335298
Alignment:
| Q |
10 |
catcatcacaacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct |
84 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8335224 |
catcatcacagcacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgatcgggcaacatct |
8335298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 163 - 302
Target Start/End: Original strand, 4684810 - 4684949
Alignment:
| Q |
163 |
tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4684810 |
tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag |
4684909 |
T |
|
| Q |
263 |
gtattttagtagcgcaaaatacttccctgaacattataac |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
4684910 |
gtattttagtagcgcaaaatacttccctgaacattataac |
4684949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 4684656 - 4684730
Alignment:
| Q |
10 |
catcatcacaacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct |
84 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4684656 |
catcatcacaacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct |
4684730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 289 - 370
Target Start/End: Complemental strand, 26632645 - 26632564
Alignment:
| Q |
289 |
ctgaacattataactttaaaaagattatttccgtagtatccaaaaataatgtcaacattgtctggaaaatgatgatattgtt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||| |||||||||||| || | ||||||||||||||||| |
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|
| T |
26632645 |
ctgaacattataactttaaaaagattatttttatattatccaaaaagaatgtcaacattatcggaaaaatgatgatattgtt |
26632564 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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