View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1593_high_2 (Length: 422)

Name: NF1593_high_2
Description: NF1593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1593_high_2
NF1593_high_2
[»] chr3 (7 HSPs)
chr3 (5-419)||(26718386-26718794)
chr3 (5-79)||(26740271-26740345)
chr3 (350-419)||(33154958-33155027)
chr3 (348-409)||(25107304-25107365)
chr3 (348-415)||(21783483-21783550)
chr3 (360-410)||(54896205-54896255)
chr3 (348-409)||(25108371-25108432)
[»] chr2 (6 HSPs)
chr2 (234-419)||(43741838-43742023)
chr2 (348-410)||(11349481-11349543)
chr2 (283-340)||(3556181-3556238)
chr2 (350-410)||(3556287-3556347)
chr2 (360-409)||(44045290-44045339)
chr2 (359-419)||(39936534-39936594)
[»] chr7 (10 HSPs)
chr7 (261-411)||(30127529-30127679)
chr7 (130-218)||(30127687-30127779)
chr7 (306-415)||(21724363-21724472)
chr7 (348-411)||(5457183-5457246)
chr7 (348-415)||(30128623-30128690)
chr7 (348-417)||(20567276-20567344)
chr7 (358-422)||(12229358-12229422)
chr7 (348-415)||(18670139-18670206)
chr7 (348-415)||(43123260-43123327)
chr7 (359-419)||(18855941-18856001)
[»] chr6 (9 HSPs)
chr6 (282-410)||(13378615-13378743)
chr6 (284-419)||(15116445-15116579)
chr6 (323-419)||(8090178-8090274)
chr6 (282-409)||(26464408-26464536)
chr6 (282-419)||(12408380-12408518)
chr6 (348-415)||(28498301-28498368)
chr6 (348-415)||(29810712-29810779)
chr6 (353-419)||(26463260-26463326)
chr6 (350-416)||(12407592-12407658)
[»] chr5 (4 HSPs)
chr5 (292-409)||(30096762-30096879)
chr5 (350-415)||(40148983-40149048)
chr5 (364-415)||(40150106-40150157)
chr5 (348-415)||(14848982-14849050)
[»] chr1 (6 HSPs)
chr1 (335-410)||(13300167-13300242)
chr1 (348-419)||(34850341-34850412)
chr1 (350-419)||(44522228-44522297)
chr1 (292-350)||(31198143-31198201)
chr1 (353-408)||(31197152-31197207)
chr1 (361-415)||(42267489-42267543)
[»] scaffold0182 (2 HSPs)
scaffold0182 (306-415)||(33001-33110)
scaffold0182 (348-415)||(31709-31776)
[»] chr8 (6 HSPs)
chr8 (360-415)||(9337111-9337166)
chr8 (373-417)||(28339260-28339304)
chr8 (339-410)||(30459461-30459532)
chr8 (348-409)||(20385659-20385720)
chr8 (348-409)||(30711993-30712054)
chr8 (348-409)||(30719770-30719831)
[»] chr4 (4 HSPs)
chr4 (354-415)||(55866194-55866255)
chr4 (350-415)||(29320114-29320181)
chr4 (360-415)||(29321193-29321248)
chr4 (358-420)||(30642432-30642494)
[»] scaffold0220 (1 HSPs)
scaffold0220 (348-414)||(24622-24688)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 5 - 419
Target Start/End: Original strand, 26718386 - 26718794
Alignment:
Q  5 aaatatacaactaaataaaataaaaaagcagataaacagacacattaatgtctgtctttccagtagttaatccgtannnnnnnnnnnnnnnatcctacac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||               |||||||||    
T  26718386 aaatatacaactaaataaaataaaaaagcagataaacagacacattaatgtctgtctttccagta-----tccgtatatatatttttttttatcctacac 26718480  T
Q  105 aaaatgataaataaaatgcttaaatatgtattgaaattttatatgatatgatgatatttttatttagtttcatactatttgtttgtttgatgaaagtggg 204  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  26718481 aaaatgataaataaaaggcttaaatatgtattgaaattttatatgatatgatgatatttttatttagtttcatgctatt-gtttgtttgatgaaagtggg 26718579  T
Q  205 ggaacatggatttgaaagagcaaagagcatgtttgtttctctggatattcagaaggtgtgttgttgggagaagacgacaaggaaacgagagggaaaaggg 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26718580 ggaacatggatttgaaagagcaaagagcatgtttgtttctctggatattcagaaggtgtgttgttgggagaagacgacaaggaaacgagaggggaaaggg 26718679  T
Q  305 agaagatgaagcccatgatattttggtcttttcgcaagttacatcagctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatg 404  Q
    ||||||||||| |   |||||||||||||||||||||||||||||||||||| ||||| |||||  | |||||  ||||||||||| |||||||||||||    
T  26718680 agaagatgaagtcagggatattttggtcttttcgcaagttacatcagctaattaatgatgtggcgcttattaatggggttgagggaccaatttttaaatg 26718779  T
Q  405 attaaactttgcaag 419  Q
    |||||||||| ||||    
T  26718780 attaaactttacaag 26718794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 26740271 - 26740345
Alignment:
Q  5 aaatatacaactaaataaaataaaaaagcagataaacagacacattaatgtctgtctttccagtagttaatccgt 79  Q
    |||||||||||||||||||||||||||||||| ||| | |||| |||||||||||||||||||||||||||||||    
T  26740271 aaatatacaactaaataaaataaaaaagcagacaaataaacacgttaatgtctgtctttccagtagttaatccgt 26740345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 350 - 419
Target Start/End: Complemental strand, 33155027 - 33154958
Alignment:
Q  350 agctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaactttgcaag 419  Q
    ||||||||| |||| ||||| | |||||||||||||||||| ||||| ||||||||||||||||| ||||    
T  33155027 agctaatcagtgacttggcactaattaactgggttgagggaccaattcttaaatgattaaactttacaag 33154958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 409
Target Start/End: Complemental strand, 25107365 - 25107304
Alignment:
Q  348 tcagctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaa 409  Q
    ||||||||||| |||||||||| |||||||||| | |||||||  || ||||||||||||||    
T  25107365 tcagctaatcactgacgtggcagtgattaactgtgatgagggacgaaattttaaatgattaa 25107304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 348 - 415
Target Start/End: Complemental strand, 21783550 - 21783483
Alignment:
Q  348 tcagctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaactttg 415  Q
    ||||||||||| |||||||||| | ||||||| || | ||||| |||||||| |||||||| ||||||    
T  21783550 tcagctaatcagtgacgtggcagtcattaactaggctcagggaccaatttttcaatgattatactttg 21783483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 54896205 - 54896255
Alignment:
Q  360 tgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaa 410  Q
    |||| ||||| | ||||||||||| ||||||||||||||||| ||||||||    
T  54896205 tgacatggcactaattaactgggtagagggatcaatttttaagtgattaaa 54896255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 25108371 - 25108432
Alignment:
Q  348 tcagctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaa 409  Q
    ||||||||||| |||||||||| |||||||||| | ||| |||  || ||||||||||||||    
T  25108371 tcagctaatcagtgacgtggcagtgattaactgtgatgaaggacgaaattttaaatgattaa 25108432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 4e-91; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 234 - 419
Target Start/End: Original strand, 43741838 - 43742023
Alignment:
Q  234 tgtttgtttctctggatattcagaaggtgtgttgttgggagaagacgacaaggaaacgagagggaaaagggagaagatgaagcccatgatattttggtct 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  43741838 tgtttgtttctctggatattcagaaggtgtgttgttgggagaagacgacaaggaaacgagagggaaaagggagaagatgaagccagtgatattttggtct 43741937  T
Q  334 tttcgcaagttacatcagctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaactttgcaag 419  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43741938 tttcgcaagttacatcagctaatcaatgacgtggcaccgattaactgggttgagggatcaatttttaaatgattaaactttgcaag 43742023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 348 - 410
Target Start/End: Original strand, 11349481 - 11349543
Alignment:
Q  348 tcagctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaa 410  Q
    |||||||||||| ||||||||| ||||||||||||||||||||  || |||||||||||||||    
T  11349481 tcagctaatcaaagacgtggcactgattaactgggttgagggacgaaattttaaatgattaaa 11349543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 340
Target Start/End: Original strand, 3556181 - 3556238
Alignment:
Q  283 aaggaaacgagagggaaaagggagaagatgaagcccatgatattttggtcttttcgca 340  Q
    ||||||||||||||||||||| |||||||||||||   | ||||||||||||||||||    
T  3556181 aaggaaacgagagggaaaaggaagaagatgaagccatgggtattttggtcttttcgca 3556238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 410
Target Start/End: Original strand, 3556287 - 3556347
Alignment:
Q  350 agctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaa 410  Q
    ||||||||||||||||||||||||||| ||| ||| | |||  || |||||||||||||||    
T  3556287 agctaatcaatgacgtggcattgattagctgagttaaaggaggaaattttaaatgattaaa 3556347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 409
Target Start/End: Original strand, 44045290 - 44045339
Alignment:
Q  360 tgacgtggcattgattaactgggttgagggatcaatttttaaatgattaa 409  Q
    |||||||||| |||||||||||| |||||||  || ||||||||||||||    
T  44045290 tgacgtggcagtgattaactgggatgagggacaaaattttaaatgattaa 44045339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 419
Target Start/End: Original strand, 39936534 - 39936594
Alignment:
Q  359 atgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaactttgcaag 419  Q
    ||||||||||||||||||| | |||  | |||  || ||||||||||||||||||||||||    
T  39936534 atgacgtggcattgattaaattggtcaaaggacgaaattttaaatgattaaactttgcaag 39936594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 261 - 411
Target Start/End: Complemental strand, 30127679 - 30127529
Alignment:
Q  261 tgtgttgttgggagaagacgacaaggaaacgagagggaaaagggagaagatgaagcccatgatattttggtcttttcgcaagttacatcagctaatcaat 360  Q
    ||||||| |||||||||||  |||| ||||||||||||||||||||||||||| ||| | | |||||||||||||| ||||||||||||||||||||| |    
T  30127679 tgtgttgctgggagaagactgcaagcaaacgagagggaaaagggagaagatgatgccaagggtattttggtctttttgcaagttacatcagctaatcagt 30127580  T
Q  361 gacgtggcattgattaactgggttgagggatcaatttttaaatgattaaac 411  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  30127579 gacgtggcactgattaactgggttgagggatcaatttttaagtgattaaac 30127529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 30127779 - 30127687
Alignment:
Q  130 atgtattgaaattttatatgata-----tgatgatatttttatttagtttcatactatttgtttgtttgatgaaagtgggggaacatggatttg 218  Q
    |||||||||||||||||||||||     ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  30127779 atgtattgaaattttatatgatatgatatgatgatatttttatttagtttcatgcta-ttgtttgtttgatgaaagtgggggaacatggatttg 30127687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 306 - 415
Target Start/End: Original strand, 21724363 - 21724472
Alignment:
Q  306 gaagatgaagcccatgatattttggtcttttcgcaagttacatcagctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatga 405  Q
    ||||||||||||   | |||||||||||||||  |||||| |||||||||||| |||||||||| ||||||| ||| ||||||||  ||||||||| |||    
T  21724363 gaagatgaagccatgggtattttggtcttttcaaaagttatatcagctaatcagtgacgtggcactgattaattggattgagggactaatttttaagtga 21724462  T
Q  406 ttaaactttg 415  Q
    ||||| ||||    
T  21724463 ttaaattttg 21724472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 411
Target Start/End: Original strand, 5457183 - 5457246
Alignment:
Q  348 tcagctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaac 411  Q
    ||||||||||| |||||||||| |||||||||||| |||||||  || ||||||||||||||||    
T  5457183 tcagctaatcagtgacgtggcagtgattaactgggatgagggacgaaattttaaatgattaaac 5457246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 415
Target Start/End: Original strand, 30128623 - 30128690
Alignment:
Q  348 tcagctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaactttg 415  Q
    ||||||||||| |||||||||| | ||||| |||| | ||||||||| |||||| |||||||||||||    
T  30128623 tcagctaatcagtgacgtggcagtaattaaatgggctcagggatcaaattttaagtgattaaactttg 30128690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 20567276 - 20567344
Alignment:
Q  348 tcagctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaactttgca 417  Q
    ||||||||||| |||||||||| ||||||||| |||||| ||| || || ||||||||||||| ||||||    
T  20567276 tcagctaatcagtgacgtggcactgattaactaggttga-ggaccagttcttaaatgattaaattttgca 20567344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 422
Target Start/End: Original strand, 12229358 - 12229422
Alignment:
Q  358 aatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaactttgcaagaat 422  Q
    |||||||||||| | ||||| |||||| |||||  || |||| ||||||||||||||||||||||    
T  12229358 aatgacgtggcagtcattaagtgggttaagggacgaaatttttaatgattaaactttgcaagaat 12229422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 348 - 415
Target Start/End: Original strand, 18670139 - 18670206
Alignment:
Q  348 tcagctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaactttg 415  Q
    ||||||||||| |||||||||| | ||||| |||| | ||||| ||| |||||| |||||||||||||    
T  18670139 tcagctaatcagtgacgtggcagtaattaaatgggcttagggaccaaattttaagtgattaaactttg 18670206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 348 - 415
Target Start/End: Complemental strand, 43123327 - 43123260
Alignment:
Q  348 tcagctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaactttg 415  Q
    ||||||||||| |||||||||| | ||||| |||| | |||||  |||||||||||||||| ||||||    
T  43123327 tcagctaatcagtgacgtggcagtcattaattgggctcagggactaatttttaaatgattatactttg 43123260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 419
Target Start/End: Original strand, 18855941 - 18856001
Alignment:
Q  359 atgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaactttgcaag 419  Q
    |||||||| || | ||||| |||||| |||||  || ||||||||||||||||||||||||    
T  18855941 atgacgtgtcagtcattaagtgggttaagggacgaaattttaaatgattaaactttgcaag 18856001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 9e-43; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 282 - 410
Target Start/End: Complemental strand, 13378743 - 13378615
Alignment:
Q  282 caaggaaacgagagggaaaagggagaagatgaagcccatgatattttggtcttttcgcaagttacatcagctaatcaatgacgtggcattgattaactgg 381  Q
    |||||||||||||||||||||| |||||||||||||   | ||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||    
T  13378743 caaggaaacgagagggaaaaggaagaagatgaagccatgggtattttggtcttttcacaagttacatcagctaatcagtgacgtggcactgattaactgg 13378644  T
Q  382 gttgagggatcaatttttaaatgattaaa 410  Q
    ||||||||| |||||||||| ||||||||    
T  13378643 gttgagggaccaatttttaagtgattaaa 13378615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 284 - 419
Target Start/End: Original strand, 15116445 - 15116579
Alignment:
Q  284 aggaaacgagagggaaaagggagaagatgaagcccatgatattttggtcttttcgcaagttacatcagctaatcaatgacgtggcattgattaactgggt 383  Q
    |||||| ||||||||||||| |||||||||||||   | ||||||||| |||||||||||||||| || |||||| ||||||||||| ||||||||||||    
T  15116445 aggaaatgagagggaaaaggaagaagatgaagccatgggtattttggtattttcgcaagttacat-agttaatcagtgacgtggcatcgattaactgggt 15116543  T
Q  384 tgagggatcaatttttaaatgattaaactttgcaag 419  Q
    ||||||| ||||||||||||||||||||||||||||    
T  15116544 tgagggaccaatttttaaatgattaaactttgcaag 15116579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 323 - 419
Target Start/End: Original strand, 8090178 - 8090274
Alignment:
Q  323 tattttggtcttttcgcaagttacatcagctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaactttgcaag 419  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||| | |||||||||| | ||||| ||| ||||||||||||||||||||||||    
T  8090178 tattttggtcttttcgcaagttacatcagctaatcagcgacgtggcaataattaactgggctcagggaccaaattttaaatgattaaactttgcaag 8090274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 282 - 409
Target Start/End: Original strand, 26464408 - 26464536
Alignment:
Q  282 caaggaaac-gagagggaaaagggagaagatgaagcccatgatattttggtcttttcgcaagttacatcagctaatcaatgacgtggcattgattaactg 380  Q
    ||||||||| || |||||||||| |||||||||||||   | |||||||||||||||||||||||||||  ||||| |  || |||||| |||||||||     
T  26464408 caaggaaactgatagggaaaaggaagaagatgaagccaggggtattttggtcttttcgcaagttacatccactaattagcgatgtggcactgattaacta 26464507  T
Q  381 ggttgagggatcaatttttaaatgattaa 409  Q
    ||||||||||||||||||||| |||||||    
T  26464508 ggttgagggatcaatttttaagtgattaa 26464536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 282 - 419
Target Start/End: Original strand, 12408380 - 12408518
Alignment:
Q  282 caaggaaac-gagagggaaaagggagaagatgaagcccatgatattttggtcttttcgcaagttacatcagctaatcaatgacgtggcattgattaactg 380  Q
    ||||||||| || |||||||||| |||||||||||||   |  ||||||||||||| ||||| ||||||||||||||| ||| ||| |  | ||||||||    
T  12408380 caaggaaactgaaagggaaaaggaagaagatgaagccaggggcattttggtctttttgcaagctacatcagctaatcagtgatgtgacggtaattaactg 12408479  T
Q  381 ggttgagggatcaatttttaaatgattaaactttgcaag 419  Q
    || | ||||||||| ||||||||||||||||||||||||    
T  12408480 ggctcagggatcaaattttaaatgattaaactttgcaag 12408518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 348 - 415
Target Start/End: Original strand, 28498301 - 28498368
Alignment:
Q  348 tcagctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaactttg 415  Q
    ||||||||||| |||||||||| |||||||||||| | ||||| ||| ||||||||||||||||||||    
T  28498301 tcagctaatcagtgacgtggcagtgattaactgggctcagggaccaaattttaaatgattaaactttg 28498368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 348 - 415
Target Start/End: Original strand, 29810712 - 29810779
Alignment:
Q  348 tcagctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaactttg 415  Q
    ||||||||||| |||||||||| |||||||||||| | ||||| ||| ||||||||||||||||||||    
T  29810712 tcagctaatcagtgacgtggcagtgattaactgggctcagggaccaaattttaaatgattaaactttg 29810779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 419
Target Start/End: Complemental strand, 26463326 - 26463260
Alignment:
Q  353 taatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaactttgcaag 419  Q
    |||||| |||||||||| |||||||||||| |||||||  || ||||||||||||||||||||||||    
T  26463326 taatcagtgacgtggcagtgattaactgggatgagggacgaaattttaaatgattaaactttgcaag 26463260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 416
Target Start/End: Complemental strand, 12407658 - 12407592
Alignment:
Q  350 agctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaactttgc 416  Q
    ||||||| | |||||||||| | ||||||| |||| ||||| ||| |||||||||||||||||||||    
T  12407658 agctaattagtgacgtggcagtaattaactaggttcagggaccaaattttaaatgattaaactttgc 12407592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 292 - 409
Target Start/End: Original strand, 30096762 - 30096879
Alignment:
Q  292 agagggaaaagggagaagatgaagcccatgatattttggtcttttcgcaagttacatcagctaatcaatgacgtggcattgattaactgggttgagggat 391  Q
    |||||||||||| |||||||||||||   | |||||||||||||||||||||||||||| ||||||  ||| |||||| ||||||||| ||||||||||     
T  30096762 agagggaaaaggaagaagatgaagccaggggtattttggtcttttcgcaagttacatcaactaatcggtgatgtggcactgattaactaggttgagggac 30096861  T
Q  392 caatttttaaatgattaa 409  Q
    |||||||||| |||||||    
T  30096862 caatttttaagtgattaa 30096879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 350 - 415
Target Start/End: Complemental strand, 40149048 - 40148983
Alignment:
Q  350 agctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaactttg 415  Q
    ||||||||| | ||||| || |||||||||||| ||||||| ||||| ||||||||||||||||||    
T  40149048 agctaatcagtcacgtgacactgattaactgggatgagggaccaattcttaaatgattaaactttg 40148983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 415
Target Start/End: Original strand, 40150106 - 40150157
Alignment:
Q  364 gtggcattgattaactgggttgagggatcaatttttaaatgattaaactttg 415  Q
    |||||| ||||||| | |||||||||| ||||| ||||||||||||||||||    
T  40150106 gtggcagtgattaattaggttgagggaccaattcttaaatgattaaactttg 40150157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 415
Target Start/End: Original strand, 14848982 - 14849050
Alignment:
Q  348 tcagctaatcaa-tgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaactttg 415  Q
    |||||||||| | ||| |||||| ||||||| |||| ||||||| ||| ||||||||||||||| ||||    
T  14848982 tcagctaatctagtgatgtggcagtgattaagtggggtgagggaccaaattttaaatgattaaattttg 14849050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 335 - 410
Target Start/End: Original strand, 13300167 - 13300242
Alignment:
Q  335 ttcgcaagttacatcagctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaa 410  Q
    |||||||||||||||||||||||| |||||||||| ||||||| |||||||| |||||||||||||| | ||||||    
T  13300167 ttcgcaagttacatcagctaatcagtgacgtggcactgattaagtgggttgaaggatcaatttttaagttattaaa 13300242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 419
Target Start/End: Original strand, 34850341 - 34850412
Alignment:
Q  348 tcagctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaactttgcaag 419  Q
    ||||||||||| |||||||||| ||||||| ||||  ||||||| || ||||||||||||||| ||||||||    
T  34850341 tcagctaatcagtgacgtggcagtgattaagtggggagagggatgaaattttaaatgattaaattttgcaag 34850412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 350 - 419
Target Start/End: Complemental strand, 44522297 - 44522228
Alignment:
Q  350 agctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaactttgcaag 419  Q
    ||||||||| |||| ||||| ||||||||||||||||  || ||||| ||||||||||||||||| ||||    
T  44522297 agctaatcagtgacttggcactgattaactgggttgaaagaccaattcttaaatgattaaactttacaag 44522228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 350
Target Start/End: Original strand, 31198143 - 31198201
Alignment:
Q  292 agagggaaaagggagaagatgaagcccatgatattttggtcttttcgcaagttacatca 350  Q
    |||||||||||| ||||||||||| |   | ||||||||||||||||||||||||||||    
T  31198143 agagggaaaaggaagaagatgaagacaggggtattttggtcttttcgcaagttacatca 31198201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 408
Target Start/End: Complemental strand, 31197207 - 31197152
Alignment:
Q  353 taatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgatta 408  Q
    |||||| |||||||||| ||||||||| || |||||||| || |||||||||||||    
T  31197207 taatcagtgacgtggcagtgattaactaggatgagggatgaaattttaaatgatta 31197152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 415
Target Start/End: Original strand, 42267489 - 42267543
Alignment:
Q  361 gacgtggcattgattaactgggttgagggatcaatttttaaatgattaaactttg 415  Q
    ||||||||||| |||||||||| ||||||| ||||||| || |||||||| ||||    
T  42267489 gacgtggcattaattaactgggctgagggaccaattttgaagtgattaaattttg 42267543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 306 - 415
Target Start/End: Original strand, 33001 - 33110
Alignment:
Q  306 gaagatgaagcccatgatattttggtcttttcgcaagttacatcagctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatga 405  Q
    ||||||||||||   | |||||||||||||||  |||||| |||||||||||| |||||||||| ||||||| ||| ||||||||  ||||||||| |||    
T  33001 gaagatgaagccatgggtattttggtcttttcaaaagttatatcagctaatcagtgacgtggcactgattaattggattgagggactaatttttaagtga 33100  T
Q  406 ttaaactttg 415  Q
    ||||| ||||    
T  33101 ttaaattttg 33110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 348 - 415
Target Start/End: Complemental strand, 31776 - 31709
Alignment:
Q  348 tcagctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaactttg 415  Q
    ||||||||||| |||||||||||||||||||||||||||| || |||||||||| |||||||| ||||    
T  31776 tcagctaatcagtgacgtggcattgattaactgggttgagagaccaatttttaagtgattaaattttg 31709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 415
Target Start/End: Complemental strand, 9337166 - 9337111
Alignment:
Q  360 tgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaactttg 415  Q
    |||||||||| ||||||||| |||||||||| ||||| ||||||||||||||||||    
T  9337166 tgacgtggcagtgattaactaggttgagggaccaattcttaaatgattaaactttg 9337111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 417
Target Start/End: Original strand, 28339260 - 28339304
Alignment:
Q  373 attaactgggttgagggatcaatttttaaatgattaaactttgca 417  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||    
T  28339260 attaactgggttgagggaccaatttttaaatgattaaattttgca 28339304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 410
Target Start/End: Complemental strand, 30459532 - 30459461
Alignment:
Q  339 caagttacatcagctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaa 410  Q
    |||||||||||||||||||| |||| || || || |||| |||||||| ||| |||||||||| ||||||||    
T  30459532 caagttacatcagctaatcagtgacatgacactggttaagtgggttgaaggaccaatttttaagtgattaaa 30459461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 409
Target Start/End: Complemental strand, 20385720 - 20385659
Alignment:
Q  348 tcagctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaa 409  Q
    ||||||||||| |||||||||| | |||||||||| | |||||  || ||||||||||||||    
T  20385720 tcagctaatcagtgacgtggcagtaattaactgggctcagggacgaaattttaaatgattaa 20385659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 30711993 - 30712054
Alignment:
Q  348 tcagctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaa 409  Q
    ||||||||||| ||| |||||| | |||||||||||| |||||  || ||||||||||||||    
T  30711993 tcagctaatcagtgatgtggcagtaattaactgggttcagggacgaaattttaaatgattaa 30712054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 30719770 - 30719831
Alignment:
Q  348 tcagctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaa 409  Q
    ||||||||||| ||| |||||| | |||||||||||| |||||  || ||||||||||||||    
T  30719770 tcagctaatcagtgatgtggcagtaattaactgggttcagggacgaaattttaaatgattaa 30719831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 354 - 415
Target Start/End: Complemental strand, 55866255 - 55866194
Alignment:
Q  354 aatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaactttg 415  Q
    ||||| |||||||||| | |||||||||||| ||||| ||||||||||||||||| ||||||    
T  55866255 aatcagtgacgtggcagttattaactgggttcagggaccaatttttaaatgattatactttg 55866194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 415
Target Start/End: Complemental strand, 29320181 - 29320114
Alignment:
Q  350 agctaatcaatgacgtggcattgattaactgggtt--gagggatcaatttttaaatgattaaactttg 415  Q
    ||||||||| ||||||| || ||||||||||||||  |||||| ||||| | ||||||||||||||||    
T  29320181 agctaatcagtgacgtgacactgattaactgggttgagagggaccaattctaaaatgattaaactttg 29320114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 415
Target Start/End: Original strand, 29321193 - 29321248
Alignment:
Q  360 tgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaactttg 415  Q
    |||||||||| ||||||||| |||||||| | ||||| ||||||||||||| ||||    
T  29321193 tgacgtggcagtgattaactaggttgaggaaccaattcttaaatgattaaaatttg 29321248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 420
Target Start/End: Original strand, 30642432 - 30642494
Alignment:
Q  358 aatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaactttgcaaga 420  Q
    |||||||||||| | ||||| |||||  |||||  || |||||||||||||||||||||||||    
T  30642432 aatgacgtggcagtcattaagtgggtcaagggacgaaattttaaatgattaaactttgcaaga 30642494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 414
Target Start/End: Original strand, 24622 - 24688
Alignment:
Q  348 tcagctaatcaatgacgtggcattgattaactgggttgagggatcaatttttaaatgattaaacttt 414  Q
    ||||||||||| |||||||||| | |||||||||| | || ||  || |||||||||||||||||||    
T  24622 tcagctaatcagtgacgtggcagtaattaactgggctcagagacaaaattttaaatgattaaacttt 24688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University