View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1593_high_7 (Length: 226)

Name: NF1593_high_7
Description: NF1593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1593_high_7
NF1593_high_7
[»] chr2 (2 HSPs)
chr2 (7-201)||(43741414-43741608)
chr2 (56-130)||(32271347-32271421)
[»] chr7 (8 HSPs)
chr7 (36-133)||(32087910-32088007)
chr7 (36-133)||(32089265-32089362)
chr7 (36-133)||(32096738-32096835)
chr7 (36-133)||(41706629-41706726)
chr7 (36-133)||(41812160-41812257)
chr7 (37-133)||(39128492-39128588)
chr7 (37-133)||(39478457-39478553)
chr7 (36-133)||(32093022-32093119)
[»] chr8 (2 HSPs)
chr8 (36-133)||(21634806-21634903)
chr8 (66-133)||(5515543-5515610)
[»] chr6 (2 HSPs)
chr6 (36-133)||(26217234-26217331)
chr6 (37-89)||(7618974-7619026)
[»] chr3 (4 HSPs)
chr3 (36-133)||(38044521-38044618)
chr3 (36-133)||(48837986-48838083)
chr3 (36-133)||(50152353-50152450)
chr3 (36-129)||(50903985-50904078)
[»] chr1 (3 HSPs)
chr1 (36-133)||(31141948-31142045)
chr1 (81-133)||(27402435-27402487)
chr1 (37-74)||(6760094-6760131)
[»] scaffold0856 (1 HSPs)
scaffold0856 (38-127)||(4895-4984)


Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 7 - 201
Target Start/End: Original strand, 43741414 - 43741608
Alignment:
Q  7 gaacttgctattttcaagcatcaaatatatgtcccttcagggacatccgataaaattaaaacgatacatagaagattaacatggctcctgcacaaggatg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43741414 gaacttgctattttcaagcatcaaatatatgtcccttcagggacatccgataaaattaaaacaatacatagaagattaacatggctcctgcacaaggatg 43741513  T
Q  107 acatgtaccaatcgagaaatggtccaagcatcaaatatattattgtccctctcaataaaagtactccctctagtccttagtataagaaaatgttt 201  Q
    ||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43741514 acacgcaccaatcgagaaatggtccaaacatcaaatatattattgtccctctcaataaaagtactccctctagtccttagtataagaaaatgttt 43741608  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 32271421 - 32271347
Alignment:
Q  56 ataaaattaaaacgatacatagaagattaacatggctcctgcacaaggatgacatgtaccaatcgagaaatggtc 130  Q
    ||||||||  ||||||||| ||||||||| |||||| ||||| ||||||||||| | || |||||||||||||||    
T  32271421 ataaaattggaacgatacaaagaagattatcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 32271347  T

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Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 32088007 - 32087910
Alignment:
Q  36 tgtcccttcagggacatccgataaaattaaaacgatacatagaagattaacatggctcctgcacaaggatgacatgtaccaatcgagaaatggtccaa 133  Q
    ||||||||| |||||||| |||||||||  ||||||||| |||||||||||||||| ||||||||||||||||| | || ||||||||||||||||||    
T  32088007 tgtcccttcggggacatctgataaaattggaacgatacagagaagattaacatggcccctgcacaaggatgacacgcacaaatcgagaaatggtccaa 32087910  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 32089362 - 32089265
Alignment:
Q  36 tgtcccttcagggacatccgataaaattaaaacgatacatagaagattaacatggctcctgcacaaggatgacatgtaccaatcgagaaatggtccaa 133  Q
    ||||||||| ||||||||||||||||||  ||||||||| ||||||||| |||||| ||||| ||||||||||| | || ||||||||||||||||||    
T  32089362 tgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaa 32089265  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 32096835 - 32096738
Alignment:
Q  36 tgtcccttcagggacatccgataaaattaaaacgatacatagaagattaacatggctcctgcacaaggatgacatgtaccaatcgagaaatggtccaa 133  Q
    ||||||||| ||||||||||||||||||  ||||||||| ||||||||| |||||| ||||| ||||||||||| | || ||||||||||||||||||    
T  32096835 tgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaa 32096738  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 41706726 - 41706629
Alignment:
Q  36 tgtcccttcagggacatccgataaaattaaaacgatacatagaagattaacatggctcctgcacaaggatgacatgtaccaatcgagaaatggtccaa 133  Q
    ||||||||| ||||||||||||||||||  ||||||||| ||||||||| |||||| ||||| ||||||||||| | || ||||||||||||||||||    
T  41706726 tgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaa 41706629  T

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Target: chr7; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 36 - 133
Target Start/End: Original strand, 41812160 - 41812257
Alignment:
Q  36 tgtcccttcagggacatccgataaaattaaaacgatacatagaagattaacatggctcctgcacaaggatgacatgtaccaatcgagaaatggtccaa 133  Q
    ||||||||| ||||||||||||||||||  ||||||||| ||||||||| |||||| ||||| ||||||||||| | || ||||||||||||||||||    
T  41812160 tgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaa 41812257  T

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Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 39128588 - 39128492
Alignment:
Q  37 gtcccttcagggacatccgataaaattaaaacgatacatagaagattaacatggctcctgcacaaggatgacatgtaccaatcgagaaatggtccaa 133  Q
    |||||||| ||||||||||||||||||  ||||||||| ||||||||| |||||| ||||| ||||||||||| | || ||||||||||||||||||    
T  39128588 gtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaa 39128492  T

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Target: chr7; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 39478457 - 39478553
Alignment:
Q  37 gtcccttcagggacatccgataaaattaaaacgatacatagaagattaacatggctcctgcacaaggatgacatgtaccaatcgagaaatggtccaa 133  Q
    |||||||| ||||||||||||||||||  ||||||||| ||||||||| |||||| ||||| ||||||||||| | || ||||||||||||||||||    
T  39478457 gtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaa 39478553  T

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Target: chr7; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 32093119 - 32093022
Alignment:
Q  36 tgtcccttcagggacatccgataaaattaaaacgatacatagaagattaacatggctcctgcacaaggatgacatgtaccaatcgagaaatggtccaa 133  Q
    ||||||||| ||||||||||||||||||  ||||||||| ||||||||| |||||| ||||  ||||||||||| | || ||||||||||||||||||    
T  32093119 tgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgtgcaaggatgacacgcacaaatcgagaaatggtccaa 32093022  T

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Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 21634903 - 21634806
Alignment:
Q  36 tgtcccttcagggacatccgataaaattaaaacgatacatagaagattaacatggctcctgcacaaggatgacatgtaccaatcgagaaatggtccaa 133  Q
    ||||||||| ||||||||||||||||||  ||||||||| ||||||||| |||||| ||||| ||||||||||| | || ||||||||||||||||||    
T  21634903 tgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaa 21634806  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 5515543 - 5515610
Alignment:
Q  66 aacgatacatagaagattaacatggctcctgcacaaggatgacatgtaccaatcgagaaatggtccaa 133  Q
    ||||||||| ||||||||| |||||| | ||| ||| ||||||| | || ||||||||||||||||||    
T  5515543 aacgatacagagaagattagcatggcccttgcgcaaagatgacacgcacaaatcgagaaatggtccaa 5515610  T

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Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 26217331 - 26217234
Alignment:
Q  36 tgtcccttcagggacatccgataaaattaaaacgatacatagaagattaacatggctcctgcacaaggatgacatgtaccaatcgagaaatggtccaa 133  Q
    ||||||||| ||||||||||||||||||  ||||||||| ||||||||| |||||| ||||| ||||||||||| | || ||||||||||||||||||    
T  26217331 tgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaa 26217234  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 7619026 - 7618974
Alignment:
Q  37 gtcccttcagggacatccgataaaattaaaacgatacatagaagattaacatg 89  Q
    |||||||| ||||||||||||||||||  || |||||| ||||||||| ||||    
T  7619026 gtcccttcggggacatccgataaaattggaatgatacagagaagattagcatg 7618974  T

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Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 38044618 - 38044521
Alignment:
Q  36 tgtcccttcagggacatccgataaaattaaaacgatacatagaagattaacatggctcctgcacaaggatgacatgtaccaatcgagaaatggtccaa 133  Q
    ||||||||| ||||||||||||||||||  ||||||||| ||||||||| |||||| ||||| ||||||||||| | || ||||||||||||||||||    
T  38044618 tgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaa 38044521  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 36 - 133
Target Start/End: Original strand, 48837986 - 48838083
Alignment:
Q  36 tgtcccttcagggacatccgataaaattaaaacgatacatagaagattaacatggctcctgcacaaggatgacatgtaccaatcgagaaatggtccaa 133  Q
    ||||||||| ||||||||||||||||||  ||||||||| ||||||||| |||||| ||||| ||||||||||| | || ||||||||||||||||||    
T  48837986 tgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaa 48838083  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 133
Target Start/End: Original strand, 50152353 - 50152450
Alignment:
Q  36 tgtcccttcagggacatccgataaaattaaaacgatacatagaagattaacatggctcctgcacaaggatgacatgtaccaatcgagaaatggtccaa 133  Q
    ||||||||  |||||||| |||||||||  ||||||||| ||||||||| |||||| ||||| ||||||||||| | || ||||||||||||||||||    
T  50152353 tgtccctttggggacatctgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaa 50152450  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 129
Target Start/End: Original strand, 50903985 - 50904078
Alignment:
Q  36 tgtcccttcagggacatccgataaaattaaaacgatacatagaagattaacatggctcctgcacaaggatgacatgtaccaatcgagaaatggt 129  Q
    |||| |||| ||||||||||||||||||  ||||||||| ||||||||| || ||| ||||| ||||||||||| | || | ||||||||||||    
T  50903985 tgtcacttcggggacatccgataaaattggaacgatacagagaagattagcaaggcccctgcgcaaggatgacacgcacaattcgagaaatggt 50904078  T

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Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 31142045 - 31141948
Alignment:
Q  36 tgtcccttcagggacatccgataaaattaaaacgatacatagaagattaacatggctcctgcacaaggatgacatgtaccaatcgagaaatggtccaa 133  Q
    ||||||||| ||||||||||||||||||  ||||||||| ||||||||| |||||| ||||| ||||||||||| | || ||||||||||||||||||    
T  31142045 tgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaa 31141948  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 27402487 - 27402435
Alignment:
Q  81 attaacatggctcctgcacaaggatgacatgtaccaatcgagaaatggtccaa 133  Q
    |||| |||||| ||||||||||||||||| | || ||||||||||||||||||    
T  27402487 attagcatggcccctgcacaaggatgacacgcacaaatcgagaaatggtccaa 27402435  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 6760094 - 6760131
Alignment:
Q  37 gtcccttcagggacatccgataaaattaaaacgataca 74  Q
    |||||||||||||||||||||||||||  |||||||||    
T  6760094 gtcccttcagggacatccgataaaattggaacgataca 6760131  T

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Target: scaffold0856 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 4984 - 4895
Alignment:
Q  38 tcccttcagggacatccgataaaattaaaacgatacatagaagattaacatggctcctgcacaaggatgacatgtaccaatcgagaaatg 127  Q
    ||||||| ||||||| ||||||||||  || |||||| ||||||| | |||||| | ||| ||||||||||| | || ||||||||||||    
T  4984 tcccttcggggacattcgataaaattggaatgatacagagaagatcagcatggcccatgcgcaaggatgacacgcacaaatcgagaaatg 4895  T

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