View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1593_low_1 (Length: 552)
Name: NF1593_low_1
Description: NF1593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1593_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 15 - 542
Target Start/End: Original strand, 46112431 - 46112959
Alignment:
| Q |
15 |
acaaaacaatctaaaaagtacaattatcaaatactaggaggagagcaacaacatttagccatatttggtgcacagataccaccaggtcggcccagtgtta |
114 |
Q |
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| T |
46112431 |
acaaaacaatctaaaaagtacaattatcaaatactaggaggagagcaacaacatttagccatctgtggtgcacagataccaccagatctgcccagtgtta |
46112530 |
T |
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| Q |
115 |
ttttacaaaattgattacaaaatggtgaaccaccaaaaccagcacatctttcgtacaaaatgcactttggttcatcatctattgaatcaactattcctgt |
214 |
Q |
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| T |
46112531 |
ttttacaaaattgattacaaaatggtgaaccaccaccaccagcacatcattcatacaaaaagcactttggttcatcatctattgaatcaactattcctgt |
46112630 |
T |
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| Q |
215 |
tacaataatgaaattccgttaaaaatattatctaatattttcagaaattttattgcattttcaaagatatagcaaacactttcatgaaaacgtgattcct |
314 |
Q |
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| T |
46112631 |
tacaataatgaaattccgttaaaaatattatctaatattttcagaaattttattgcattttcaaagatatagcaaacactttcatgaaaacgtgattcct |
46112730 |
T |
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| Q |
315 |
aaaacctgcattaaaaaagtatgcatatcaaacaccactcatttttatttatacgaaaaatttagagcaagtggactatgcctcaatcttatataggaaa |
414 |
Q |
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| T |
46112731 |
aaaacctgcattaaaaaagtatgcatatcaaacaccactcatttttatttatacgaaaaatttagagcaagtggactatacctcaatcttatataggaaa |
46112830 |
T |
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| Q |
415 |
gaccttaaaa-ttttgacaacattgaccaagagatatacatttatcttaatacaaaaacattagcaagaccacaatacatgatccaatgcctctttcttt |
513 |
Q |
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| T |
46112831 |
gaccttaaaatttttgacaacattgaccaagagatatacatttatcttaatacaaaaacattagcaagaccacaatatatgatccaatgcctctttcttt |
46112930 |
T |
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| Q |
514 |
tatcactataccaaaacatttgagttcat |
542 |
Q |
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| T |
46112931 |
tatcactataccaaaacatttgagttcat |
46112959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 169 - 249
Target Start/End: Original strand, 17449052 - 17449129
Alignment:
| Q |
169 |
acaaaatgcactttggttcatcatctattgaatcaactattcctgttacaataatgaaattccgttaaaaatattatctaa |
249 |
Q |
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|||||| ||||||| || | ||||| ||| ||| ||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
17449052 |
acaaaaagcactttcgtgtagcatctgttggatcgactattcctgttacaat---gaaactccgttaaaaatattatctaa |
17449129 |
T |
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