View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1593_low_2 (Length: 514)
Name: NF1593_low_2
Description: NF1593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1593_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 41 - 496
Target Start/End: Original strand, 8974016 - 8974471
Alignment:
| Q |
41 |
acttggtaatggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatatt |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8974016 |
acttggtaatggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatatt |
8974115 |
T |
|
| Q |
141 |
acacaactaatcaaagtgaaaagtaagattgttgtctgtgaagacaagaatggaactcttcttgatcaagtttctaatttgcttacagtaatagttgtag |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8974116 |
acacaactaatcaaagtgaaaagtaagattgttgtctgtgaagacaagaatggaactctttttgatcaagtttctaatttgcttacagtaatagttgtag |
8974215 |
T |
|
| Q |
241 |
gagctgttattatatcaaacacttcacaaaataatctatcacaacttttagggttccagcttccatatatcattattaaccaaaccaatggagaaattat |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
8974216 |
gagctgttattatatcaaacacttcacaaaataatctatcacaacttttagggttccagcttccatacatcattattaaccaaaccaatggagaaattat |
8974315 |
T |
|
| Q |
341 |
caaagattacatacaaagtaactctaactccagttcaatagaaaaaatttctttcaagataacatcttttggtgctaaaccagctcctagcgtggatttt |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8974316 |
caaagattacatacaaagtaactctaactccagttcaatagaaaaaatttctttcaagataacatcttttggtgctaaaccagctcctagcgtggatttt |
8974415 |
T |
|
| Q |
441 |
tatagttcaagaggtccttcagaaagttgcccaaatgttttgaaacctgacattac |
496 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
8974416 |
tatagttcaagaggtccttctgaaagttgcccaaatgttttgaaacctgacattac |
8974471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 41 - 496
Target Start/End: Original strand, 8962620 - 8963075
Alignment:
| Q |
41 |
acttggtaatggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatatt |
140 |
Q |
| |
|
|||||||||||||||||||||| | ||||| |||| ||| |||||||||||||||||||||||||||| |||||||||| |||| |||||||||| || |
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|
| T |
8962620 |
acttggtaatggagtctcactcaccggcttctcttcctatataggaaacttctctgctagtaatattcccattgttttcaaaggtatgtgtgacaatttt |
8962719 |
T |
|
| Q |
141 |
acacaactaatcaaagtgaaaagtaagattgttgtctgtgaagacaagaatggaactcttcttgatcaagtttctaatttgcttacagtaatagttgtag |
240 |
Q |
| |
|
||| ||||||||| |||||| || ||||||| || |||||||||||||||| || |||| | ||||| ||| |||| || ||| || | |||||||| |
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|
| T |
8962720 |
acagaactaatcagagtgaagagcgagattgtggtttgtgaagacaagaatgaaagtctttctaatcaaatttataatgtggttaaagcagaagttgtag |
8962819 |
T |
|
| Q |
241 |
gagctgttattatatcaaacacttcacaaaataatctatcacaacttttagggttccagcttccatatatcattattaaccaaaccaatggagaaattat |
340 |
Q |
| |
|
||||| || ||||||||||||| ||||| || |||||||| || ||| ||| || |||||||| |||||||||||||| | ||||||||||| | |
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|
| T |
8962820 |
gagctatttttatatcaaacacaacacaagatgatctatcagaagacttacggtacctgcttccatccatcattattaaccagaaaaatggagaaatggt |
8962919 |
T |
|
| Q |
341 |
caaagattacatacaaagtaactctaactccagttcaatagaaaaaatttctttcaagataacatcttttggtgctaaaccagctcctagcgtggatttt |
440 |
Q |
| |
|
||||||||||||||| ||||||| |||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||| ||||||||| |
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|
| T |
8962920 |
caaagattacatacatagtaactttaactctagttcaatagaaaaaatgtctttcaagattacatcttttggtgctaaaccagtacctagggtggatttt |
8963019 |
T |
|
| Q |
441 |
tatagttcaagaggtccttcagaaagttgcccaaatgttttgaaacctgacattac |
496 |
Q |
| |
|
|||||||| ||||| || ||| | ||||| ||| |||| ||||||||||||||||| |
|
|
| T |
8963020 |
tatagttctagagggccatcaaagagttgtccatatgtgttgaaacctgacattac |
8963075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 8946470 - 8946351
Alignment:
| Q |
41 |
acttggtaatggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatatt |
140 |
Q |
| |
|
|||||||||||||||||||||| | || | ||| |||||||||||| ||||||||||| ||| | |||||||||||||||||| ||| |||||| || |
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|
| T |
8946470 |
acttggtaatggagtctcactcacaggttggtctaattatctaggaaatttctctgctagcaatttgccaattgttttcatgggtttgtgcgacaatgtt |
8946371 |
T |
|
| Q |
141 |
acacaactaatcaaagtgaa |
160 |
Q |
| |
|
||| || ||||||||||||| |
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|
| T |
8946370 |
acagaattaatcaaagtgaa |
8946351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 498
Target Start/End: Original strand, 8958005 - 8958063
Alignment:
| Q |
440 |
ttatagttcaagaggtccttcagaaagttgcccaaatgttttgaaacctgacattactg |
498 |
Q |
| |
|
||||||||||||||| |||||| | ||||| ||| || |||||||||||||||| |||| |
|
|
| T |
8958005 |
ttatagttcaagagggccttcaaatagttgtccatatattttgaaacctgacatcactg |
8958063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 41 - 259
Target Start/End: Complemental strand, 21687618 - 21687400
Alignment:
| Q |
41 |
acttggtaatggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatatt |
140 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||||| |||||||||||||||||||||| ||| ||||||||||||| ||||||| |||||||||| || |
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|
| T |
21687618 |
acttggtaatggagtctcactcactggtttgtctttctatctaggaaacttctctgctaacaattttccaattgtttttatgggtatgtgtgacaatgtt |
21687519 |
T |
|
| Q |
141 |
acacaactaatcaaagtgaaaagtaagattgttgtctgtgaagacaagaatggaactcttcttgatcaagtttctaatttgcttacagtaatagttgtag |
240 |
Q |
| |
|
| | || ||| || |||||| || |||||||| || ||||||| ||| |||| |||||||| ||| ||| | | |||| || || || || |||||| | |
|
|
| T |
21687518 |
aaagaattaaacacagtgaagagaaagattgtggtttgtgaaggcaataatgaaactcttcatgaacaaatgtttaatgtgtataaagcaaaagttgttg |
21687419 |
T |
|
| Q |
241 |
gagctgttattatatcaaa |
259 |
Q |
| |
|
||| |||| |||||||||| |
|
|
| T |
21687418 |
gaggtgtttttatatcaaa |
21687400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 359 - 498
Target Start/End: Complemental strand, 21687306 - 21687167
Alignment:
| Q |
359 |
taactctaactccagttcaatagaaaaaatttctttcaagataacatcttttggtgctaaaccagctcctagcgtggatttttatagttcaagaggtcct |
458 |
Q |
| |
|
|||||||||| | |||||||||| ||| || |||||||||| |||| |||| |||| |||| || | ||||| |||||||||||||| ||||| || || |
|
|
| T |
21687306 |
taactctaacgctagttcaatagcaaacatgtctttcaagaaaacagctttcggtgttaaatcaacacctagtgtggatttttatagctcaaggggacca |
21687207 |
T |
|
| Q |
459 |
tcagaaagttgcccaaatgttttgaaacctgacattactg |
498 |
Q |
| |
|
||| | ||||| ||| |||| |||||||||||||| |||| |
|
|
| T |
21687206 |
tcaaatagttgtccatatgtgttgaaacctgacatcactg |
21687167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 498
Target Start/End: Complemental strand, 19375989 - 19375881
Alignment:
| Q |
390 |
tctttcaagataacatcttttggtgctaaaccagctcctagcgtggatttttatagttcaagaggtccttcagaaagttgcccaaatgttttgaaacctg |
489 |
Q |
| |
|
|||||||||| |||| |||||||| ||||||| | ||||| || ||| |||||||||||||||| |||||| | | ||| ||| ||| |||||||| | |
|
|
| T |
19375989 |
tctttcaagaaaacaatttttggtgttaaaccaacacctagtgttgatctttatagttcaagagggccttcaaataattgtccatttgtgttgaaacccg |
19375890 |
T |
|
| Q |
490 |
acattactg |
498 |
Q |
| |
|
|||| |||| |
|
|
| T |
19375889 |
acatcactg |
19375881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 498
Target Start/End: Complemental strand, 34962895 - 34962787
Alignment:
| Q |
390 |
tctttcaagataacatcttttggtgctaaaccagctcctagcgtggatttttatagttcaagaggtccttcagaaagttgcccaaatgttttgaaacctg |
489 |
Q |
| |
|
||||||| || |||| |||||| |||||||||| ||||| || |||| |||||||||||||| || ||| | ||||| ||| ||| |||||||||| |
|
|
| T |
34962895 |
tctttcatgaaaacagtttttggaactaaaccagcacctagtgttgattcatatagttcaagagggccatcatatagttgtccatttgtgttgaaacctg |
34962796 |
T |
|
| Q |
490 |
acattactg |
498 |
Q |
| |
|
||||||||| |
|
|
| T |
34962795 |
acattactg |
34962787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 34963123 - 34963079
Alignment:
| Q |
153 |
aaagtgaaaagtaagattgttgtctgtgaagacaagaatggaact |
197 |
Q |
| |
|
||||||||||| |||||| | || ||||||||||||||||||||| |
|
|
| T |
34963123 |
aaagtgaaaagcaagattatagtgtgtgaagacaagaatggaact |
34963079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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