View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1593_low_3 (Length: 499)

Name: NF1593_low_3
Description: NF1593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1593_low_3
NF1593_low_3
[»] chr4 (3 HSPs)
chr4 (11-487)||(2901472-2901948)
chr4 (257-424)||(2883142-2883309)
chr4 (261-420)||(2872944-2873103)
[»] chr2 (3 HSPs)
chr2 (256-418)||(44226355-44226517)
chr2 (256-418)||(44237153-44237315)
chr2 (255-421)||(44214184-44214350)
[»] chr7 (8 HSPs)
chr7 (256-407)||(39551713-39551864)
chr7 (256-410)||(39359673-39359827)
chr7 (289-419)||(39333840-39333970)
chr7 (289-419)||(39345119-39345249)
chr7 (257-410)||(39542498-39542651)
chr7 (273-410)||(39578117-39578254)
chr7 (274-411)||(39592590-39592727)
chr7 (255-407)||(39568559-39568711)
[»] chr8 (1 HSPs)
chr8 (273-359)||(4496147-4496233)
[»] chr1 (3 HSPs)
chr1 (273-350)||(2152544-2152621)
chr1 (273-356)||(2164800-2164883)
chr1 (319-383)||(41691458-41691522)


Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 11 - 487
Target Start/End: Original strand, 2901472 - 2901948
Alignment:
Q  11 cacagaaattacttcttatacttagtgagatttgtgcgacgccaagttagaaggatactttcggaaaaaacagtttttatgcagcctggaagtatacttt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2901472 cacagaaattacttcttatacttagtgagatttgtgcgacgccaagttagaaggatactttcggaaaaaacagtttttatgcaacctggaagtatacttt 2901571  T
Q  111 cgaagagnnnnnnnnnncagtccgaaagtatatttccggacacatgtgtggtttttatagaaatgtgacataattaagaagctcgcaattagatatgagg 210  Q
    |||||||          | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2901572 cgaagagttttttttttccgtccgaaagtatatttccggacacatgtgtggtttttatagaaatgtgacataataaagaagctcgcaattagatatgagg 2901671  T
Q  211 gataagttagataggnnnnnnngacaaggaatttgtgtagaaaatgactaaccataacgtgatccaacgccttggcaccttgctgagaaagccaatgttt 310  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2901672 gataagttagataggaaaaaaagacaaggaatttgtgtagaaaatgactaaccataacgtgatccaacgccttggcaccttgctgagaaagccaatgttt 2901771  T
Q  311 ccctaacagtcatttctccaatatgaacatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcac 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2901772 ccctaacagtcatttctccaatatgaacatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcac 2901871  T
Q  411 tctcccagatacctttagaacacaatgtcatggaatttattgtttgttaaaatgacgtaggtactcgaggggatttg 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2901872 tctcccagatacctttagaacacaatgtcatggaatttattgtttgttaaaatgacgtaggtactcgaggggatttg 2901948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 257 - 424
Target Start/End: Complemental strand, 2883309 - 2883142
Alignment:
Q  257 actaaccataacgtgatccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatata 356  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2883309 actaaccataacgtgatccgacaccttggcaccttgctgagaaagccaaggtttccctcacagtcatttctccaatatgaacatcatgttgactaatata 2883210  T
Q  357 tgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccagatacct 424  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  2883209 tgcagcagttctctgaggtacaaattcatccatcccatgtccattataagttactctccctgatacct 2883142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 261 - 420
Target Start/End: Complemental strand, 2873103 - 2872944
Alignment:
Q  261 accataacgtgatccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatatatgca 360  Q
    |||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2873103 accatatcttgatccaactccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatatatgca 2873004  T
Q  361 gcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccagat 420  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||    
T  2873003 gcagttctttgaggtacaaattcatccattccatatccattataagtcactctaccagat 2872944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 8e-56; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 256 - 418
Target Start/End: Original strand, 44226355 - 44226517
Alignment:
Q  256 gactaaccataacgtgatccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatat 355  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || ||||    
T  44226355 gactaaccataacgtgatccaactccttggcaccttgctgagaaagccaaggtttccctcacagtcatttctccaatatgaacatcatgttggcttatat 44226454  T
Q  356 atgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccag 418  Q
    | ||||||||||||||||||||||| |||| ||  ||||| ||||| |||||||| |||||||    
T  44226455 aggcagcagttctttgaggtacaaactcattcagtccatggccattgtaagtcacactcccag 44226517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 256 - 418
Target Start/End: Original strand, 44237153 - 44237315
Alignment:
Q  256 gactaaccataacgtgatccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatat 355  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| || ||||    
T  44237153 gactaaccataacgtgatccaactccttggcatcttgctgagaaagccaaggtttctctcacagtcatttctccaatatgaacatcatgttggctgatat 44237252  T
Q  356 atgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccag 418  Q
    | || |||||||||||||||||||| || | ||  ||||| ||||| |||||||| |||||||    
T  44237253 aagccgcagttctttgaggtacaaactcgttcagtccatggccattgtaagtcacactcccag 44237315  T

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Target: chr2; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 255 - 421
Target Start/End: Original strand, 44214184 - 44214350
Alignment:
Q  255 tgactaaccataacgtgatccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaata 354  Q
    ||||| ||| ||||| |||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||| || || |||    
T  44214184 tgactcaccgtaacgagatccaactccttggcaccttgctgagaaagctaaggtttccctcacagtcatttctccaatgtgaacatcatgctggctgata 44214283  T
Q  355 tatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccagata 421  Q
    || ||||||||||||||||||||||| |||| ||  || |||||||| || |||||  |||||||||    
T  44214284 taagcagcagttctttgaggtacaaactcattcagtccgtgtccattgtaggtcacattcccagata 44214350  T

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Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 256 - 407
Target Start/End: Original strand, 39551713 - 39551864
Alignment:
Q  256 gactaaccataacgtgatccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatat 355  Q
    |||||||||||||| |  ||||| ||||||  |||||||||||||||||| ||||| |||||||||||||||||||| |||| ||||| ||||   | ||    
T  39551713 gactaaccataacgaggcccaactccttggacccttgctgagaaagccaaggtttctctaacagtcatttctccaatgtgaagatcattttgatccacat 39551812  T
Q  356 atgcagcagttctttgaggtacaaattcatccatcccatgtccattataagt 407  Q
    | ||||||||||||||||| ||||| |||| |||| |||| |||||||||||    
T  39551813 aagcagcagttctttgaggcacaaactcattcatctcatgaccattataagt 39551864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 256 - 410
Target Start/End: Complemental strand, 39359827 - 39359673
Alignment:
Q  256 gactaaccataacgtgatccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatat 355  Q
    |||||||||||||| | |||||| ||||||   || |||||||| ||||| ||||| |||||||||||||||||||| |||| ||||| ||||   | ||    
T  39359827 gactaaccataacgaggtccaactccttggactctagctgagaaggccaaggtttctctaacagtcatttctccaatgtgaagatcattttgatccacat 39359728  T
Q  356 atgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcac 410  Q
    | |||||||||||||| |||||||| |||  |||| |||| ||||||||||||||    
T  39359727 aagcagcagttctttggggtacaaactcactcatctcatgaccattataagtcac 39359673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 289 - 419
Target Start/End: Complemental strand, 39333970 - 39333840
Alignment:
Q  289 cttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatatatgcagcagttctttgaggtacaaattcatcca 388  Q
    ||||| ||||| |||| |||||| |||||||||| ||||||||| |||| ||||| ||||   | |||||||||||||||||| || |||||||||  ||    
T  39333970 cttgccgagaaggccagtgtttctctaacagtcaattctccaatgtgaagatcattttgatccacatatgcagcagttctttgggggacaaattcactca 39333871  T
Q  389 tcccatgtccattataagtcactctcccaga 419  Q
    || |||| |||||||||||||| || |||||    
T  39333870 tctcatgaccattataagtcacccttccaga 39333840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 289 - 419
Target Start/End: Complemental strand, 39345249 - 39345119
Alignment:
Q  289 cttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatatatgcagcagttctttgaggtacaaattcatcca 388  Q
    ||||| ||||| ||||||||||| |||||||||| ||||||||| |||| ||||| ||||   | ||| |||||||||||||| || |||||||||  ||    
T  39345249 cttgccgagaaggccaatgtttctctaacagtcaattctccaatgtgaagatcattttgatccacataagcagcagttctttgggggacaaattcactca 39345150  T
Q  389 tcccatgtccattataagtcactctcccaga 419  Q
    || |||| |||||||||||||| || |||||    
T  39345149 tctcatgaccattataagtcacccttccaga 39345119  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 257 - 410
Target Start/End: Original strand, 39542498 - 39542651
Alignment:
Q  257 actaaccataacgtgatccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatata 356  Q
    ||||||||||||| |  ||||| ||||||  |||||| ||||| ||||| ||||| |||||||||||||||||||| ||||  |||| ||||   | |||    
T  39542498 actaaccataacgcggcccaactccttggacccttgccgagaaggccaaggtttctctaacagtcatttctccaatgtgaaggtcattttgatccacata 39542597  T
Q  357 tgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcac 410  Q
     || ||||||||||| || ||||| ||| ||||| |||| ||||||||||||||    
T  39542598 agcggcagttctttgggggacaaactcacccatctcatgaccattataagtcac 39542651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 273 - 410
Target Start/End: Original strand, 39578117 - 39578254
Alignment:
Q  273 tccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatatatgcagcagttctttga 372  Q
    |||||| |||||| | |||||||||||  |||| ||||| ||||| |||| ||||||||| |||| ||| | |||||| | ||| |||||||||||||||    
T  39578117 tccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatcgttttgactgacataagcagcagttctttga 39578216  T
Q  373 ggtacaaattcatccatcccatgtccattataagtcac 410  Q
    |||||||| |||| |||| |||| || || ||||||||    
T  39578217 ggtacaaactcattcatctcatgaccgttgtaagtcac 39578254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 274 - 411
Target Start/End: Original strand, 39592590 - 39592727
Alignment:
Q  274 ccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatatatgcagcagttctttgag 373  Q
    ||||||||||||   ||||| ||||| ||||  ||||| || ||||||| ||||||||  |||| ||||| |||||| | ||| |||||||||||||| |    
T  39592590 ccaacgccttggactcttgcggagaaggccatcgtttctctgacagtcaattctccaaggtgaagatcattttgactgacataagcagcagttctttggg 39592689  T
Q  374 gtacaaattcatccatcccatgtccattataagtcact 411  Q
    |||||||||| | |||| |||| ||||||||| |||||    
T  39592690 gtacaaattctttcatctcatgaccattataactcact 39592727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 407
Target Start/End: Original strand, 39568559 - 39568711
Alignment:
Q  255 tgactaaccataacgtgatccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaata 354  Q
    ||||||||||||||| | |||||| ||||||   | ||||||||| ||||| ||||| || || |||||||||||||| |||| ||||| ||||   | |    
T  39568559 tgactaaccataacgaggtccaactccttggactcgtgctgagaaggccaaggtttctcttactgtcatttctccaatgtgaagatcattttgatccaca 39568658  T
Q  355 tatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagt 407  Q
    ||||||||||||| ||| || ||||| |||  |||| |||| |||||||||||    
T  39568659 tatgcagcagttcgttgggggacaaactcactcatctcatgaccattataagt 39568711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 273 - 359
Target Start/End: Complemental strand, 4496233 - 4496147
Alignment:
Q  273 tccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatatatgc 359  Q
    |||||| |||||||| || ||||| ||| | || |||||  | |||||||||||||||| ||||||||||| |||||||||||||||    
T  4496233 tccaactccttggcatctagctgaaaaatctaaggtttcttttacagtcatttctccaacatgaacatcattttgactaatatatgc 4496147  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 273 - 350
Target Start/End: Original strand, 2152544 - 2152621
Alignment:
Q  273 tccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgact 350  Q
    |||||| ||||| || |||||||||||||||| |||||| || ||||||||||||||||| |||  ||||| ||||||    
T  2152544 tccaaccccttgacatcttgctgagaaagccagtgtttctctcacagtcatttctccaatgtgattatcatattgact 2152621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 356
Target Start/End: Original strand, 2164800 - 2164883
Alignment:
Q  273 tccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatata 356  Q
    |||||| ||||| || |||||||||||||| |  ||||| || || |||||||||||||| |||  |||||||||||| |||||    
T  2164800 tccaaccccttgacatcttgctgagaaagctagggtttctcttacggtcatttctccaatgtgattatcatgttgacttatata 2164883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 383
Target Start/End: Original strand, 41691458 - 41691522
Alignment:
Q  319 gtcatttctccaatatgaacatcatgttgactaatatatgcagcagttctttgaggtacaaattc 383  Q
    ||||| ||||||  ||||| || |||||||||||||||||||   ||||||||||| ||||||||    
T  41691458 gtcatctctccatgatgaagattatgttgactaatatatgcacatgttctttgaggaacaaattc 41691522  T

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