View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1593_low_5 (Length: 355)
Name: NF1593_low_5
Description: NF1593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1593_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 36157210 - 36156871
Alignment:
| Q |
1 |
ctgtttccttcacttgtcaatatttttgtgtcacatgttttgtccctttatataaaaacgttcctcattggggttctcgagaaaagggacagagttgctg |
100 |
Q |
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| T |
36157210 |
ctgtttccttcacttgtcaatatttttgtgtcacatgttttgtccctttatataaaaacgttcctcattggggttctcgagaaaagggaccgagttgctg |
36157111 |
T |
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| Q |
101 |
tacattgaatcattgatattggtcatgcaattcatatatgatgcctaatcttaaccctaataataatatatatagtcttcatttaattgtctactacgta |
200 |
Q |
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| T |
36157110 |
tacattgaatcattgatattggtcatgcaattcatatatgatgcctaatcttaaccctaataataatatatatagtcttcatttaattgtctactacgta |
36157011 |
T |
|
| Q |
201 |
tagaagccagctaagttcatcaataaggaatatatcttgcattttatttcccatcatgcatgagaatgacggaaattttttgtgacatatgtagaatgaa |
300 |
Q |
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| T |
36157010 |
tagaagccagctaagttcatcaataaggaatatatcttgcattttatttcccatcatgcatgagaatgacggaaattttttgtgacatatgtagaatgaa |
36156911 |
T |
|
| Q |
301 |
gaacaaggtgatactattgatgcacaagctgtgaaacaag |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
36156910 |
gaacaaggtgatactattgatgcacaagctgtgaaacaag |
36156871 |
T |
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