View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1593_low_6 (Length: 343)
Name: NF1593_low_6
Description: NF1593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1593_low_6 |
 | |
|
| [»] chr2 (7 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 343
Target Start/End: Complemental strand, 32206876 - 32206541
Alignment:
| Q |
8 |
gaccagagaccatctactgcattcaacagtcctgaaagtgtcacctgttgaaattttgaaacaaacattttagttttccaatnnnnnnncatttgacatg |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32206876 |
gaccaaagaccatctactgcattcaacagtcctgaaagtgtcacctgttgaaattttgaaacaaacattttagttttccaataaaaaaacatttgacatg |
32206777 |
T |
|
| Q |
108 |
aacagaagaatatgacgccattcgattcaagtagtctttcatcttactaacaagcttacagtaannnnnnnatacatgaaactttacaagagttgcatta |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32206776 |
aacagaagaatatgacgccattcgattcaagtagtctttcatcttactaacaaccttacagtaatttttttatacatgaaactttacaagagttgcatta |
32206677 |
T |
|
| Q |
208 |
tagagactcgttatgataaaacaggtaagtaagcattctgaacctatgctctaacaggttatattaataatgaatatataaaatgcattctacacacatt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32206676 |
tagagactcgttatgataaaacaggtaagtaagcattctgaacctatgctctaacaggttatattaataatgactatataaaatgcattctacacacatt |
32206577 |
T |
|
| Q |
308 |
gcaatcaatcaatttaattttatcaattccaaattt |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
32206576 |
tcaatcaatcaatttaattttatcaattccaaattt |
32206541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 32156768 - 32156818
Alignment:
| Q |
8 |
gaccagagaccatctactgcattcaacagtcctgaaagtgtcacctgttga |
58 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32156768 |
gaccaaagaccatctactgcattcaatagtcctgaaagtgtcacctgttga |
32156818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 32174544 - 32174594
Alignment:
| Q |
8 |
gaccagagaccatctactgcattcaacagtcctgaaagtgtcacctgttga |
58 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32174544 |
gaccaaagaccatctactgcattcaatagtcctgaaagtgtcacctgttga |
32174594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 32110584 - 32110636
Alignment:
| Q |
8 |
gaccagagaccatctactgcattcaacagtcctgaaagtgtcacctgttgaaa |
60 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
32110584 |
gaccaaagaccatctactgcattcaatagtcctgaaagtgtcatctgttgaaa |
32110636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 32118848 - 32118898
Alignment:
| Q |
8 |
gaccagagaccatctactgcattcaacagtcctgaaagtgtcacctgttga |
58 |
Q |
| |
|
||||| |||||||| || |||||||| |||||||||||||||||||||||| |
|
|
| T |
32118848 |
gaccaaagaccatcaacagcattcaatagtcctgaaagtgtcacctgttga |
32118898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 32211951 - 32211899
Alignment:
| Q |
8 |
gaccagagaccatctactgcattcaacagtcctgaaagtgtcacctgttgaaa |
60 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| |||||||||| |||| |||| |
|
|
| T |
32211951 |
gaccaaagaccatctactgcattcaatagtcccgaaagtgtcatctgtagaaa |
32211899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 32182630 - 32182680
Alignment:
| Q |
8 |
gaccagagaccatctactgcattcaacagtcctgaaagtgtcacctgttga |
58 |
Q |
| |
|
||||| ||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
32182630 |
gaccaaagaccatctgtcgcattcaatagtcctgaaagtgtcacctgttga |
32182680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University