View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1594-INSERTION-26 (Length: 816)

Name: NF1594-INSERTION-26
Description: NF1594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1594-INSERTION-26
NF1594-INSERTION-26
[»] chr7 (12 HSPs)
chr7 (19-222)||(13796445-13796647)
chr7 (64-224)||(18535660-18535819)
chr7 (72-206)||(3568526-3568660)
chr7 (64-184)||(12314854-12314972)
chr7 (72-223)||(39703030-39703184)
chr7 (116-230)||(1723421-1723532)
chr7 (72-202)||(1966329-1966458)
chr7 (160-223)||(10206658-10206721)
chr7 (166-222)||(9456941-9456997)
chr7 (64-115)||(48520020-48520071)
chr7 (16-58)||(39702886-39702928)
chr7 (175-224)||(48644162-48644211)
[»] scaffold0054 (2 HSPs)
scaffold0054 (20-223)||(28656-28859)
scaffold0054 (72-224)||(49669-49821)
[»] chr2 (8 HSPs)
chr2 (61-224)||(24079408-24079569)
chr2 (72-222)||(25417080-25417229)
chr2 (64-200)||(44481332-44481466)
chr2 (72-180)||(5783427-5783534)
chr2 (158-222)||(2707129-2707193)
chr2 (158-222)||(31898579-31898643)
chr2 (163-230)||(38981526-38981593)
chr2 (158-223)||(24863911-24863976)
[»] chr6 (27 HSPs)
chr6 (72-222)||(21393335-21393484)
chr6 (72-224)||(15907003-15907153)
chr6 (72-222)||(21683171-21683319)
chr6 (72-222)||(20881908-20882056)
chr6 (72-224)||(14463489-14463639)
chr6 (72-222)||(18801383-18801532)
chr6 (72-224)||(31569307-31569461)
chr6 (76-222)||(18715273-18715417)
chr6 (111-223)||(7456841-7456953)
chr6 (505-594)||(8931079-8931170)
chr6 (64-222)||(19382901-19383055)
chr6 (72-223)||(31877113-31877272)
chr6 (165-232)||(23160780-23160847)
chr6 (64-205)||(18175928-18176066)
chr6 (64-128)||(18223735-18223799)
chr6 (158-222)||(19214781-19214845)
chr6 (165-224)||(17102635-17102694)
chr6 (157-223)||(8848080-8848145)
chr6 (75-141)||(20025685-20025750)
chr6 (161-222)||(2666141-2666202)
chr6 (165-222)||(17724581-17724638)
chr6 (164-224)||(32616896-32616956)
chr6 (164-222)||(14603975-14604033)
chr6 (159-212)||(16308045-16308098)
chr6 (166-223)||(19002769-19002826)
chr6 (164-224)||(8909966-8910026)
chr6 (158-222)||(23094602-23094666)
[»] chr5 (13 HSPs)
chr5 (72-222)||(42882983-42883131)
chr5 (72-232)||(38925427-38925587)
chr5 (72-224)||(35328808-35328959)
chr5 (72-220)||(22545725-22545870)
chr5 (72-173)||(35329256-35329356)
chr5 (161-224)||(21112709-21112772)
chr5 (163-224)||(22362555-22362616)
chr5 (163-216)||(27032680-27032733)
chr5 (86-185)||(32727016-32727114)
chr5 (168-223)||(42920363-42920418)
chr5 (162-204)||(4002728-4002770)
chr5 (123-181)||(19835223-19835281)
chr5 (170-223)||(29391371-29391424)
[»] chr8 (16 HSPs)
chr8 (72-224)||(8223728-8223878)
chr8 (82-223)||(43974731-43974871)
chr8 (72-215)||(13586226-13586368)
chr8 (72-199)||(44967468-44967594)
chr8 (72-198)||(43974605-43974730)
chr8 (75-184)||(22932071-22932179)
chr8 (72-224)||(7964863-7965011)
chr8 (123-205)||(44508141-44508223)
chr8 (166-223)||(16047108-16047165)
chr8 (158-222)||(22216423-22216487)
chr8 (161-223)||(508261-508323)
chr8 (166-223)||(23120521-23120578)
chr8 (132-196)||(44967384-44967448)
chr8 (166-205)||(21349415-21349454)
chr8 (165-223)||(29634735-29634793)
chr8 (165-223)||(45537326-45537384)
[»] chr4 (14 HSPs)
chr4 (64-222)||(18811229-18811385)
chr4 (72-223)||(19112024-19112178)
chr4 (72-223)||(50377325-50377475)
chr4 (72-199)||(52374279-52374404)
chr4 (83-223)||(43593764-43593905)
chr4 (123-222)||(1701212-1701311)
chr4 (116-222)||(13757135-13757238)
chr4 (112-222)||(16612222-16612332)
chr4 (161-223)||(35577351-35577413)
chr4 (83-141)||(43593548-43593605)
chr4 (16-69)||(13757263-13757316)
chr4 (159-224)||(16526368-16526433)
chr4 (163-212)||(20702737-20702786)
chr4 (175-220)||(39479861-39479906)
[»] chr1 (16 HSPs)
chr1 (72-222)||(44201581-44201730)
chr1 (72-224)||(15723200-15723351)
chr1 (72-223)||(42958607-42958758)
chr1 (72-222)||(19193719-19193865)
chr1 (98-224)||(46351888-46352014)
chr1 (75-143)||(24249613-24249681)
chr1 (72-143)||(18504814-18504884)
chr1 (75-188)||(46757962-46758075)
chr1 (64-128)||(22045748-22045812)
chr1 (64-116)||(22033403-22033455)
chr1 (165-220)||(2248044-2248099)
chr1 (161-223)||(46123005-46123067)
chr1 (72-143)||(7487293-7487367)
chr1 (158-205)||(25613993-25614040)
chr1 (16-58)||(7487149-7487191)
chr1 (65-106)||(43097919-43097960)
[»] scaffold0557 (1 HSPs)
scaffold0557 (72-233)||(6424-6583)
[»] scaffold0590 (1 HSPs)
scaffold0590 (72-202)||(8958-9087)
[»] scaffold0283 (2 HSPs)
scaffold0283 (72-199)||(13602-13728)
scaffold0283 (132-196)||(13518-13582)
[»] scaffold0214 (2 HSPs)
scaffold0214 (72-227)||(21702-21856)
scaffold0214 (72-224)||(29138-29293)
[»] chr3 (16 HSPs)
chr3 (72-223)||(7566963-7567113)
chr3 (146-222)||(9767914-9767990)
chr3 (137-222)||(46124028-46124113)
chr3 (158-224)||(18740861-18740927)
chr3 (158-223)||(11028071-11028135)
chr3 (165-222)||(41935243-41935300)
chr3 (161-222)||(53157279-53157340)
chr3 (164-222)||(15212737-15212795)
chr3 (164-222)||(15251956-15252014)
chr3 (164-224)||(6079879-6079939)
chr3 (165-222)||(21972645-21972702)
chr3 (165-222)||(21995076-21995133)
chr3 (163-223)||(14163410-14163470)
chr3 (166-230)||(51425364-51425428)
chr3 (164-222)||(22155376-22155434)
chr3 (159-212)||(34493448-34493501)
[»] scaffold0041 (1 HSPs)
scaffold0041 (72-224)||(32189-32338)
[»] scaffold0159 (1 HSPs)
scaffold0159 (72-180)||(36890-36997)
[»] scaffold0337 (2 HSPs)
scaffold0337 (71-162)||(137-227)
scaffold0337 (164-224)||(789-849)
[»] scaffold0077 (1 HSPs)
scaffold0077 (158-222)||(52532-52596)
[»] scaffold0072 (1 HSPs)
scaffold0072 (161-222)||(46284-46345)
[»] scaffold0553 (1 HSPs)
scaffold0553 (158-222)||(6549-6613)
[»] scaffold0726 (1 HSPs)
scaffold0726 (72-143)||(5591-5661)
[»] scaffold0281 (1 HSPs)
scaffold0281 (158-219)||(4581-4642)
[»] scaffold0179 (1 HSPs)
scaffold0179 (158-222)||(28436-28500)
[»] scaffold0039 (2 HSPs)
scaffold0039 (158-222)||(102232-102296)
scaffold0039 (164-223)||(84238-84297)
[»] scaffold0760 (1 HSPs)
scaffold0760 (72-143)||(152-222)
[»] scaffold0422 (1 HSPs)
scaffold0422 (59-116)||(10295-10352)
[»] scaffold0086 (1 HSPs)
scaffold0086 (158-201)||(42467-42510)
[»] scaffold0320 (1 HSPs)
scaffold0320 (166-223)||(14208-14265)
[»] scaffold0220 (1 HSPs)
scaffold0220 (158-219)||(28500-28561)


Alignment Details
Target: chr7 (Bit Score: 152; Significance: 5e-80; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 13796445 - 13796647
Alignment:
Q  19 ataaatttcactcatgtttcatgtagattcatcttccataaaatatatgatatttcttttaattctaataattttgttcaagatatatcaagaaaaaact 118  Q
    ||||||||||||||||||||||| ||||||||||| |||| ||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  13796445 ataaatttcactcatgtttcatgcagattcatctttcatagaatgtatgatttttcttttaattctaataattttgtt-aagatatatcaagaaaaaact 13796543  T
Q  119 aaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgc 218  Q
    ||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||    
T  13796544 aaagcaacattgatgttaaaaaacacgttgtttatgagttacatacgttagcgcaatagaaagagcggacagacgtgcacgagagtgcctgtctggacgc 13796643  T
Q  219 tagt 222  Q
    ||||    
T  13796644 tagt 13796647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 64 - 224
Target Start/End: Complemental strand, 18535819 - 18535660
Alignment:
Q  64 tatgatatttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacata 163  Q
    |||||||||||||||||||||||||||||| | |||||||||||||| |||| ||||| |||||||| ||||||||||||   ||||| ||| ||||||     
T  18535819 tatgatatttcttttaattctaataattttctccaagatatatcaag-aaaatctaaa-caacattgttgttgaaaaacatactgtttatgagttacatg 18535722  T
Q  164 cgttagcgcaatagaaagagcggactga-cgggcacgggagtgcctgtctggacgctagtat 224  Q
    |||||||||| |||||||||||||| || |||||||||||||||| ||||||||||||||||    
T  18535721 cgttagcgcagtagaaagagcggacagaccgggcacgggagtgcccgtctggacgctagtat 18535660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 72 - 206
Target Start/End: Complemental strand, 3568660 - 3568526
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacatt-gatgttgaaaaacacgttgtttctgaattacatacgttagc 170  Q
    |||||||||||||||||||||| | |||||||||||||||||||| |||| |||| || ||||||||||||||   ||||| | ||||||||  ||||||    
T  3568660 ttcttttaattctaataattttctccaagatatatcaagaaaaaa-taaaccaacttttgatgttgaaaaacatactgtttataaattacatgtgttagc 3568562  T
Q  171 gcaatagaaagagcggactgacgggcacgggagtgc 206  Q
    ||| |||||||||||||| |||||||||||||||||    
T  3568561 gcagtagaaagagcggacagacgggcacgggagtgc 3568526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 64 - 184
Target Start/End: Complemental strand, 12314972 - 12314854
Alignment:
Q  64 tatgatatttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacata 163  Q
    |||||||||||||||||||||||||||||| | |||||||||| ||| |||||||||| |||||||||||||||||||||   ||||| ||| ||||||     
T  12314972 tatgatatttcttttaattctaataattttctccaagatatataaag-aaaaactaaa-caacattgatgttgaaaaacatactgtttatgagttacatg 12314875  T
Q  164 cgttagcgcaatagaaagagc 184  Q
    ||||| |||| ||||||||||    
T  12314874 cgttaacgcagtagaaagagc 12314854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 39703030 - 39703184
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaa---aactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgtta 168  Q
    |||||||||||||||||||||| |  |||||||||  | ||||   |||||||||||| ||||||||||||||||   || || ||  ||||||  ||||    
T  39703030 ttcttttaattctaataattttctcgaagatatatataaaaaagaaaactaaagcaacgttgatgttgaaaaacatactgcttatgcgttacatgggtta 39703129  T
Q  169 gcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagta 223  Q
    || |  |||||||||||||| |||||||||||||||||| |||||||||||||||    
T  39703130 gcccggtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagta 39703184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 116 - 230
Target Start/End: Complemental strand, 1723532 - 1723421
Alignment:
Q  116 actaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctgga 215  Q
    |||||||||||||||||||||||||| |||||   | ||| ||| || ||||||  || ||||||||||| || |||||||||||||||||| |||||||    
T  1723532 actaaagcaacattgatgttgaaaaatacgtt---tatgagttatatgcgttagtacagtagaaagagcgaacagacgggcacgggagtgcccgtctgga 1723436  T
Q  216 cgctagtatcaataa 230  Q
    |||||||| ||||||    
T  1723435 cgctagtagcaataa 1723421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 72 - 202
Target Start/End: Complemental strand, 1966458 - 1966329
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    ||||| |||||||||||||||| | || |||||| ||||||| || |||| |||||| |||||| ||||| |   ||||| ||| |||||| ||||| ||    
T  1966458 ttcttgtaattctaataattttctccaggatataccaagaaacaa-taaaccaacatcgatgttcaaaaatatactgtttatgagttacatgcgttaacg 1966360  T
Q  172 caatagaaagagcggactgacgggcacggga 202  Q
    || |||||||||||||| |||||||||||||    
T  1966359 cagtagaaagagcggacagacgggcacggga 1966329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 10206721 - 10206658
Alignment:
Q  160 catacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagta 223  Q
    |||||||||||||| | |||| ||||||| ||||||||||| |||||| |||||||||||||||    
T  10206721 catacgttagcgcagtggaaaaagcggacagacgggcacggaagtgccggtctggacgctagta 10206658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 9456997 - 9456941
Alignment:
Q  166 ttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    ||||||||||||||| ||||||| |||||| ||||||||| | |||| |||||||||    
T  9456997 ttagcgcaatagaaaaagcggacagacgggtacgggagtgtccgtctagacgctagt 9456941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 48520071 - 48520020
Alignment:
Q  64 tatgatatttcttttaattctaataattttgttcaagatatatcaagaaaaa 115  Q
    |||||| |||||||||||| |||||||||| | |||||||||| ||||||||    
T  48520071 tatgatctttcttttaattttaataattttctccaagatatattaagaaaaa 48520020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 39702886 - 39702928
Alignment:
Q  16 cccataaatttcactcatgtttcatgtagattcatcttccata 58  Q
    ||||||||| |||||||||||||||||| ||||||| ||||||    
T  39702886 cccataaatgtcactcatgtttcatgtatattcatcctccata 39702928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 48644162 - 48644211
Alignment:
Q  175 tagaaagagcggactgacgggcacgggagtgcctgtctggacgctagtat 224  Q
    |||||| ||||||| |||||||||| ||||| | ||||||||||||||||    
T  48644162 tagaaaaagcggacagacgggcacgagagtgtccgtctggacgctagtat 48644211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 128; Significance: 1e-65; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 28656 - 28859
Alignment:
Q  20 taaatttcactcatgtttcatgtagattcatcttccataaaatatatgatatttcttttaattctaataattttgttcaagatatatcaagaaaaaacta 119  Q
    |||||||||||||||||||||| ||||||||||| |||| ||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28656 taaatttcactcatgtttcatgcagattcatctttcatagaatgtatgatctttcttttaattctaataattttgttcaagatataccaagaaaaaacta 28755  T
Q  120 aagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgct 219  Q
    || |||||||||| || ||||||||||||||| ||| |||||||||||| |||| ||||| |||||||| ||||| ||||| |||||| ||||| |||||    
T  28756 aatcaacattgatattaaaaaacacgttgtttatgagttacatacgttaacgcagtagaatgagcggacagacggacacggaagtgcccgtctgtacgct 28855  T
Q  220 agta 223  Q
    ||||    
T  28856 agta 28859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 72 - 224
Target Start/End: Complemental strand, 49821 - 49669
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacatt-gatgttgaaaaacacgttgtttctgaattacatacgttagc 170  Q
    |||||||||||||||||||||| | ||||||||||||||||||| ||||| |||| || ||||||||||||||   ||||| | ||||||||  |||| |    
T  49821 ttcttttaattctaataattttctccaagatatatcaagaaaaa-ctaaaccaacttttgatgttgaaaaacatactgtttataaattacatgtgttatc 49723  T
Q  171 gcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagtat 224  Q
     |||||||| ||||||||  || ||||| |||||||| ||||||||||||||||    
T  49722 acaatagaaggagcggacatacaggcacaggagtgcccgtctggacgctagtat 49669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 5e-49; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 61 - 224
Target Start/End: Original strand, 24079408 - 24079569
Alignment:
Q  61 atatatgatatttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattac 160  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||| ||||||||||||| |||||||   ||||| ||| ||||    
T  24079408 atatatgatatttcttttaattctaataattttctccaagatatatcaagaaaaa-ctaaa-caacattgatgttaaaaaacatactgtttatgagttac 24079505  T
Q  161 atacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagtat 224  Q
    || |||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  24079506 atgcgttagcgcagtagaaagagcggacagacggacacgggagtgcctgtctggacgctagtat 24079569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 72 - 222
Target Start/End: Complemental strand, 25417229 - 25417080
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    |||||||||||||||||||||| | ||||||||||||||||| | |||||  ||||||||||||||||||||   ||||| |||||||||| ||||||||    
T  25417229 ttcttttaattctaataattttctccaagatatatcaagaaaga-ctaaacaaacattgatgttgaaaaacataatgtttatgaattacatgcgttagcg 25417131  T
Q  172 caatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    || |||||||||||||| ||||||||| |||||| |  |||||||||||||    
T  25417130 cagtagaaagagcggacagacgggcacaggagtgtccatctggacgctagt 25417080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 64 - 200
Target Start/End: Complemental strand, 44481466 - 44481332
Alignment:
Q  64 tatgatatttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacata 163  Q
    |||||||||||| ||||||||||||||||| | ||||||||||  | ||||||||||| |||||||||||||||||||||  |||||| ||| ||||||     
T  44481466 tatgatatttctcttaattctaataattttctccaagatatattta-aaaaaactaaa-caacattgatgttgaaaaacatattgtttatgagttacatg 44481369  T
Q  164 cgttagcgcaatagaaagagcggactgacgggcacgg 200  Q
      |||||||| |||||||||||||| ||||| |||||    
T  44481368 tattagcgcagtagaaagagcggacagacggacacgg 44481332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 72 - 180
Target Start/End: Original strand, 5783427 - 5783534
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    |||||||||||||||||||||| | |||||||||| |||||||| ||||| |||||||||||||||||||||   ||||| ||| |||||| ||||||||    
T  5783427 ttcttttaattctaataattttctccaagatatattaagaaaaa-ctaaaccaacattgatgttgaaaaacatactgtttatgagttacatgcgttagcg 5783525  T
Q  172 caatagaaa 180  Q
    || ||||||    
T  5783526 cagtagaaa 5783534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 2707129 - 2707193
Alignment:
Q  158 tacatacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    |||||||||||||||| |||||| ||||||| |||||||||||||||||| ||||||||||||||    
T  2707129 tacatacgttagcgcagtagaaaaagcggacagacgggcacgggagtgcccgtctggacgctagt 2707193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 31898579 - 31898643
Alignment:
Q  158 tacatacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    |||||||||||||||| |||||||||||||  |||||||||||||||||| ||||||||||||||    
T  31898579 tacatacgttagcgcagtagaaagagcggatagacgggcacgggagtgcccgtctggacgctagt 31898643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 38981526 - 38981593
Alignment:
Q  163 acgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagtatcaataa 230  Q
    |||||||||||||||||||||||||| ||| || ||| ||||||| |||| ||||||||||| |||||    
T  38981526 acgttagcgcaatagaaagagcggacagacaggtacgagagtgcccgtctagacgctagtataaataa 38981593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 24863976 - 24863911
Alignment:
Q  158 tacatacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagta 223  Q
    ||||| |||||||||| |||||| ||||||| ||| |||||| ||||||| |||||||||||||||    
T  24863976 tacatgcgttagcgcagtagaaaaagcggacagacaggcacgagagtgcccgtctggacgctagta 24863911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 5e-46; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 72 - 222
Target Start/End: Original strand, 21393335 - 21393484
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    |||||||||||||||||||||| | |||||||||| |||||||| ||||| |||||||||||||||||||||| |||||| | | |||||| ||||||||    
T  21393335 ttcttttaattctaataattttctccaagatatattaagaaaaa-ctaaaccaacattgatgttgaaaaacacattgttttttatttacatgcgttagcg 21393433  T
Q  172 caatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    || |||||||||||||| |||||||||||||||||| ||||||||||||||    
T  21393434 cagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 21393484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 15907003 - 15907153
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    |||||||||||||||||||||| | ||||||||||||||||||| ||||| |||||||||||||||||||||  |||||| ||| |||||| ||||||||    
T  15907003 ttcttttaattctaataattttctccaagatatatcaagaaaaa-ctaaa-caacattgatgttgaaaaacatattgtttatgagttacatgcgttagcg 15907100  T
Q  172 caatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagtat 224  Q
    || |||||||||||||| |||||||||||||||||| |||| |||||||||||    
T  15907101 cagtagaaagagcggacagacgggcacgggagtgcccgtctagacgctagtat 15907153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 72 - 222
Target Start/End: Complemental strand, 21683319 - 21683171
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    ||||||||||||||||||| || |  |||||||||||||||||| ||||| |||||||||||||||||| ||   ||||| ||| |||||| ||||||||    
T  21683319 ttcttttaattctaataatgttctctaagatatatcaagaaaaa-ctaaaccaacattgatgttgaaaa-catactgtttatgagttacatgcgttagcg 21683222  T
Q  172 caatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    ||||||||||||||||| |||||||||||||||||| ||||| ||||||||    
T  21683221 caatagaaagagcggacagacgggcacgggagtgcccgtctgaacgctagt 21683171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 72 - 222
Target Start/End: Original strand, 20881908 - 20882056
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    ||||||||||||||||||| || |  |||||||||||||||||| ||||| |||||||||||||||||| ||   ||||| ||| |||||| ||||||||    
T  20881908 ttcttttaattctaataatgttctctaagatatatcaagaaaaa-ctaaaccaacattgatgttgaaaa-catactgtttatgagttacatgcgttagcg 20882005  T
Q  172 caatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    ||||||||||||||||| ||| |||||||||||||| ||||| ||||||||    
T  20882006 caatagaaagagcggacagacaggcacgggagtgcccgtctgaacgctagt 20882056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 72 - 224
Target Start/End: Complemental strand, 14463639 - 14463489
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    |||||||||||||||||||||| | ||||||||||||||||||| ||||| |||||||||||||||||||||    |||| | | |||||| ||||||||    
T  14463639 ttcttttaattctaataattttctccaagatatatcaagaaaaa-ctaaa-caacattgatgttgaaaaacataccgtttataagttacatgcgttagcg 14463542  T
Q  172 caatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagtat 224  Q
    || ||||||||||| ||  |||||| |||||||||| ||||||||||||||||    
T  14463541 cagtagaaagagcgaacaaacgggcgcgggagtgcccgtctggacgctagtat 14463489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 72 - 222
Target Start/End: Original strand, 18801383 - 18801532
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    |||||||| ||||||||||||| | |||||||||| |||||||| ||||| |||||||||||||||||||||   ||||| ||| | |||| | ||||||    
T  18801383 ttcttttagttctaataattttctccaagatatatgaagaaaaa-ctaaaccaacattgatgttgaaaaacatactgtttatgagtaacatgcattagcg 18801481  T
Q  172 caatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
     | ||||||||||| || |||||||||||||||||| || |||||||||||    
T  18801482 tagtagaaagagcgaacagacgggcacgggagtgcccgtttggacgctagt 18801532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 72 - 224
Target Start/End: Complemental strand, 31569461 - 31569307
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatat---caagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgtta 168  Q
    |||||||||||||||||||||| |  |||||||||    || | |||||||||||||| ||||||||||||||||  |||||| ||| ||||||| ||||    
T  31569461 ttcttttaattctaataattttctcgaagatatatataaaaaagaaaactaaagcaacgttgatgttgaaaaacatattgtttatgagttacatatgtta 31569362  T
Q  169 gcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagtat 224  Q
    ||||| |||||||||||||| ||||||||| |||||||| |||| || ||||||||    
T  31569361 gcgcagtagaaagagcggacagacgggcac-ggagtgcccgtctagatgctagtat 31569307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 76 - 222
Target Start/End: Complemental strand, 18715417 - 18715273
Alignment:
Q  76 tttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcgcaat 175  Q
    |||||||||||||||||| | ||||||||||||||||||| ||||| |||||||||||||||||||||   ||||| ||| |||||| |  ||||| | |    
T  18715417 tttaattctaataattttctccaagatatatcaagaaaaa-ctaaa-caacattgatgttgaaaaacatactgtttatgagttacatgctatagcgtagt 18715320  T
Q  176 agaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    |||||||||||||  || |||||||||||||| ||||| ||||||||    
T  18715319 agaaagagcggacaaacaggcacgggagtgcccgtctgaacgctagt 18715273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 111 - 223
Target Start/End: Complemental strand, 7456953 - 7456841
Alignment:
Q  111 aaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgt 210  Q
    ||||||||||| |||||||||||||||||||||  |||||| ||| |||||| |||||||||| ||||||||||| || |||| ||| ||||||||| ||    
T  7456953 aaaaaactaaaccaacattgatgttgaaaaacatattgtttatgagttacatgcgttagcgcagtagaaagagcgaacagacgagcaggggagtgcccgt 7456854  T
Q  211 ctggacgctagta 223  Q
    || ||||| ||||    
T  7456853 ctagacgcaagta 7456841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 505 - 594
Target Start/End: Original strand, 8931079 - 8931170
Alignment:
Q  505 tttgttaatttatattatattggttta--tatctttcttgaactctcttcttcataccaatgtaagttgaaagattcacacataggattgta 594  Q
    |||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||| ||  |||| |||||||    
T  8931079 tttgttaatttatattttattggtttaaatatctttcttgaactctcttcttcataccaatgaaagttgaaagatgcatccataagattgta 8931170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 64 - 222
Target Start/End: Original strand, 19382901 - 19383055
Alignment:
Q  64 tatgatatttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacata 163  Q
    ||||||| | ||||| |||||| ||||||||| ||||| |||||||||||||  |||| ||||||| |     |||||||  |||||| ||| ||| |||    
T  19382901 tatgataatccttttgattctactaattttgtccaagacatatcaagaaaaag-taaaccaacattaaac---aaaaacatattgtttatgagttatata 19382996  T
Q  164 cgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    |||||||||| |||||| ||||||| |||||||||||||||||| ||||||||||||||    
T  19382997 cgttagcgcagtagaaaaagcggacagacgggcacgggagtgcccgtctggacgctagt 19383055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 31877113 - 31877272
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaa--------aactaaagcaacattgatgttgaaaaacacgttgtttctgaattacata 163  Q
    |||||||||||||||||||||| | |||||||||| || ||||        ||||||| |||||||||| ||| |||| |  |||||| ||  ||||||     
T  31877113 ttcttttaattctaataattttctccaagatatataaaaaaaaactaaaaaaactaaatcaacattgatattggaaaaaatattgtttatgtgttacatg 31877212  T
Q  164 cgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagta 223  Q
    |||||||||| |||||||||||||| |||||  ||||||||||| |||||||||||||||    
T  31877213 cgttagcgcagtagaaagagcggacagacggatacgggagtgccggtctggacgctagta 31877272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 23160780 - 23160847
Alignment:
Q  165 gttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagtatcaataatg 232  Q
    ||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||| | |||||||    
T  23160780 gttagcgcagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagtgtgaataatg 23160847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 205
Target Start/End: Complemental strand, 18176066 - 18175928
Alignment:
Q  64 tatgatatttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacata 163  Q
    |||||||||||||||| |||||||| |||||| ||||||| |||||||||||| |||| ||||||  |     |||||||   ||||| | | ||||| |    
T  18176066 tatgatatttcttttagttctaatatttttgtccaagataaatcaagaaaaaagtaaaccaacatcaa---acaaaaacataatgtttataagttacaca 18175970  T
Q  164 cgttagcgcaatagaaagagcggactgacgggcacgggagtg 205  Q
    |||||||| | |||||||||||||| |||||||||| |||||    
T  18175969 cgttagcgtagtagaaagagcggacagacgggcacgagagtg 18175928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 18223735 - 18223799
Alignment:
Q  64 tatgatatttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacat 128  Q
    |||||||||||||||| |||||||| |||||| ||||||| |||||||||||| |||| ||||||    
T  18223735 tatgatatttcttttagttctaatatttttgtccaagataaatcaagaaaaaagtaaaccaacat 18223799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 19214845 - 19214781
Alignment:
Q  158 tacatacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    ||||| |||||||||  |||||| ||||||| |||||||||||||||||| ||||||||||||||    
T  19214845 tacatgcgttagcgcggtagaaaaagcggacagacgggcacgggagtgcccgtctggacgctagt 19214781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 17102635 - 17102694
Alignment:
Q  165 gttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagtat 224  Q
    ||||||||| |||||||||||||| || ||||| ||||||||| ||||||||||||||||    
T  17102635 gttagcgcagtagaaagagcggacagatgggcatgggagtgcccgtctggacgctagtat 17102694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 8848145 - 8848080
Alignment:
Q  157 ttacatacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagta 223  Q
    |||| |||||||||||| |||||| ||||||| ||||||||||||||||||  ||||||||||||||    
T  8848145 ttacctacgttagcgcagtagaaaaagcggacagacgggcacgggagtgcc-ctctggacgctagta 8848080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 20025685 - 20025750
Alignment:
Q  75 ttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaa 141  Q
    ||||||||||||||||||| | |||||||||||||| ||||| ||||  ||||||||||||||||||    
T  20025685 ttttaattctaataattttctccaagatatatcaag-aaaaagtaaactaacattgatgttgaaaaa 20025750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 2666141 - 2666202
Alignment:
Q  161 atacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    ||||||||||||| |||||| | ||||| |||||||||||||||||| ||||||| ||||||    
T  2666141 atacgttagcgcagtagaaaaaacggacagacgggcacgggagtgcccgtctggatgctagt 2666202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 17724581 - 17724638
Alignment:
Q  165 gttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    ||||||||| |||||| ||||||| |||||||| ||||||||| ||||||||||||||    
T  17724581 gttagcgcagtagaaaaagcggacagacgggcatgggagtgcccgtctggacgctagt 17724638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 32616956 - 32616896
Alignment:
Q  164 cgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagtat 224  Q
    |||||||| | |||||| ||||||| |||||||||||||||||| ||||||||| ||||||    
T  32616956 cgttagcgtagtagaaaaagcggacagacgggcacgggagtgcccgtctggacgttagtat 32616896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 14603975 - 14604033
Alignment:
Q  164 cgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    |||||||||| |||||| || |||| |||||| ||||||||||| ||||||||||||||    
T  14603975 cgttagcgcagtagaaaaagtggacagacgggtacgggagtgcccgtctggacgctagt 14604033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 16308045 - 16308098
Alignment:
Q  159 acatacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtct 212  Q
    |||| |||||||||| |||||||||||||||||||||||||  |||||| ||||    
T  16308045 acatgcgttagcgcagtagaaagagcggactgacgggcacgatagtgcccgtct 16308098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 19002769 - 19002826
Alignment:
Q  166 ttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagta 223  Q
    |||||||  |||||| ||||||| |||||| ||||||||||| |||||||||||||||    
T  19002769 ttagcgcggtagaaaaagcggacagacgggtacgggagtgcccgtctggacgctagta 19002826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 8909966 - 8910026
Alignment:
Q  164 cgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagtat 224  Q
    |||| ||||| |||||| ||||| | |||||||||| ||||||| ||||||||||||||||    
T  8909966 cgtttgcgcagtagaaaaagcgggcagacgggcacgagagtgcccgtctggacgctagtat 8910026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 23094602 - 23094666
Alignment:
Q  158 tacatacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    ||||| |||||||||| |||||||||||||| |||||| ||||||||  | || |||||||||||    
T  23094602 tacatgcgttagcgcagtagaaagagcggacagacgggaacgggagtatccgtttggacgctagt 23094666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 1e-43; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 72 - 222
Target Start/End: Original strand, 42882983 - 42883131
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| |||||||  |||||| ||| |||||| ||||||||    
T  42882983 ttcttttaattctaataattttcttcaagatatatcaagaaaaa-ctaaa-caacattgatgttaaaaaacatattgtttatgagttacatgcgttagcg 42883080  T
Q  172 caatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    || || ||||||||||| |||||||||||||||||| ||||||||||||||    
T  42883081 cagtaaaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 42883131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 72 - 232
Target Start/End: Complemental strand, 38925587 - 38925427
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacatt-gatgttgaaaaacacgttgtttctgaattacatacgttagc 170  Q
    |||||||||||||||||||||| | |||||||||||||||||||| |||| |||| || ||||||||||||||   ||||| | ||||||||  ||||||    
T  38925587 ttcttttaattctaataattttctccaagatatatcaagaaaaaa-taaaccaacttttgatgttgaaaaacatactgtttataaattacatgtgttagc 38925489  T
Q  171 gcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagtatcaataatg 232  Q
    | | |||||||||||||| |||||||||||||||||| |||||||||||||||  |||||||    
T  38925488 gtagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagtactaataatg 38925427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 72 - 224
Target Start/End: Complemental strand, 35328959 - 35328808
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    |||||| ||||||||||||||| | |||||||||||| |||||||||||  |||| ||||||||||||||||  |||||| ||| ||||||  |||||||    
T  35328959 ttctttcaattctaataattttctccaagatatatca-gaaaaaactaacccaaccttgatgttgaaaaacatattgtttatgagttacatgtgttagcg 35328861  T
Q  172 caatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagtat 224  Q
    || |||||||||||||| |||||||||| || |||| ||||||||||||||||    
T  35328860 cagtagaaagagcggacagacgggcacgtgaatgcccgtctggacgctagtat 35328808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 72 - 220
Target Start/End: Original strand, 22545725 - 22545870
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    ||||||||||||||||||| || |  |||||||||||||||||| ||||| |||||||||||||||||| ||   ||||| ||| |||||| ||||||||    
T  22545725 ttcttttaattctaataatattctctaagatatatcaagaaaaa-ctaaa-caacattgatgttgaaaa-cattctgtttatgagttacatgcgttagcg 22545821  T
Q  172 caatagaaagagcggactgacgggcacgggagtgcctgtctggacgcta 220  Q
    ||||| | ||||||||| |||||||||||||||||| |||| |||||||    
T  22545822 caataaatagagcggacagacgggcacgggagtgcccgtctagacgcta 22545870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 72 - 173
Target Start/End: Complemental strand, 35329356 - 35329256
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    |||||| ||||||||||||||| | |||||||||||| |||||||||||  |||| ||||||||||||||||  |||||| ||| |||||| ||||||||    
T  35329356 ttctttcaattctaataattttctccaagatatatca-gaaaaaactaacccaaccttgatgttgaaaaacatattgtttatgagttacatgcgttagcg 35329258  T
Q  172 ca 173  Q
    ||    
T  35329257 ca 35329256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 21112772 - 21112709
Alignment:
Q  161 atacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagtat 224  Q
    |||||||| |||| |||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  21112772 atacgttatcgcagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagtat 21112709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 22362616 - 22362555
Alignment:
Q  163 acgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagtat 224  Q
    ||||||||||| |||||| ||||||| |||||||||||||||||| ||||||||||||||||    
T  22362616 acgttagcgcagtagaaaaagcggacagacgggcacgggagtgcccgtctggacgctagtat 22362555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 27032680 - 27032733
Alignment:
Q  163 acgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggac 216  Q
    ||||||||||| |||||||||||||| |||||||||||||||||| ||||||||    
T  27032680 acgttagcgcagtagaaagagcggacagacgggcacgggagtgcccgtctggac 27032733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 32727016 - 32727114
Alignment:
Q  86 ataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcgcaatagaaagagcg 185  Q
    |||||||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||   ||||| ||| |||||| |||| ||| | |||||| ||||    
T  32727016 ataattttattcaagatatatcaataaaaa-ctaaaccaacattgatgttgaaaaacatactgtttatgagttacatgcgttggcgtagtagaaaaagcg 32727114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 42920418 - 42920363
Alignment:
Q  168 agcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagta 223  Q
    |||||| |||||||||||||| |||||||| | || |||| |||||||||||||||    
T  42920418 agcgcagtagaaagagcggacagacgggcatgagaatgcccgtctggacgctagta 42920363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 4002728 - 4002770
Alignment:
Q  162 tacgttagcgcaatagaaagagcggactgacgggcacgggagt 204  Q
    |||||||| |||||||||| ||||||| |||||||||||||||    
T  4002728 tacgttagagcaatagaaaaagcggacagacgggcacgggagt 4002770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 19835223 - 19835281
Alignment:
Q  123 caacattgatgttgaaaaacacgttgtttctgaattacatacgttagcgcaatagaaag 181  Q
    |||||||||||||||||||||   ||||| ||| |||||| |||||||||| |||||||    
T  19835223 caacattgatgttgaaaaacatactgtttatgagttacatgcgttagcgcagtagaaag 19835281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 29391371 - 29391424
Alignment:
Q  170 cgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagta 223  Q
    ||||||||||| |||||||  ||||||||||||||| | ||||||||| |||||    
T  29391371 cgcaatagaaaaagcggacaaacgggcacgggagtgtccgtctggacgatagta 29391424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 4e-40; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 72 - 224
Target Start/End: Complemental strand, 8223878 - 8223728
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| |||||||   ||||| ||| |||||| |||||| |    
T  8223878 ttcttttaattctaataattttcttcaagatatatcaagaaaaa-ctaaa-caacattgatgttaaaaaacatactgtttatgagttacatgcgttagtg 8223781  T
Q  172 caatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagtat 224  Q
    || |||||||||||||| || ||||||||||||||| ||||||||||||||||    
T  8223780 cagtagaaagagcggacagaagggcacgggagtgcccgtctggacgctagtat 8223728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 82 - 223
Target Start/End: Original strand, 43974731 - 43974871
Alignment:
Q  82 tctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcgcaatagaaag 181  Q
    |||||||||| | | ||||||||||||||||||| |||||  || |||||||||||||||||  |||||| ||| |||||| ||||||||||||||||||    
T  43974731 tctaataattctctccaagatatatcaagaaaaa-ctaaatgaaaattgatgttgaaaaacatattgtttatgagttacatgcgttagcgcaatagaaag 43974829  T
Q  182 agcggactgacgggcacgggagtgcctgtctggacgctagta 223  Q
    |||||||  |||| |||||||||||| |||||||||||||||    
T  43974830 agcggacaaacggacacgggagtgcccgtctggacgctagta 43974871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 72 - 215
Target Start/End: Original strand, 13586226 - 13586368
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    |||||||||||||||||||||| | ||||||||||||||||||| |||||  ||||||||||||||||||||   ||||| ||| |||||| |||| | |    
T  13586226 ttcttttaattctaataattttctccaagatatatcaagaaaaa-ctaaataaacattgatgttgaaaaacataatgtttatgagttacatgcgttcgtg 13586324  T
Q  172 caatagaaagagcggactgacgggcacgggagtgcctgtctgga 215  Q
    || |||||||||| ||| |||||||||||||||||| |||||||    
T  13586325 cagtagaaagagcagacagacgggcacgggagtgcccgtctgga 13586368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 44967594 - 44967468
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    |||||| ||||||||||||||| | |||||||||||| |||||||||||  |||| ||||||||||||||||  |||||| ||| |||||| ||||||||    
T  44967594 ttctttcaattctaataattttctccaagatatatca-gaaaaaactaacccaaccttgatgttgaaaaacatattgtttatgagttacatgcgttagcg 44967496  T
Q  172 caatagaaagagcggactgacgggcacg 199  Q
    || |||||||||||||| ||||||||||    
T  44967495 cagtagaaagagcggacagacgggcacg 44967468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 72 - 198
Target Start/End: Original strand, 43974605 - 43974730
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    |||||||||||||||||||| | | ||||||||||||||||||| |||||  || |||||||||||||||||  |||||| ||| |||||| || |||||    
T  43974605 ttcttttaattctaataattctctccaagatatatcaagaaaaa-ctaaacaaaaattgatgttgaaaaacatattgtttatgagttacatgcgctagcg 43974703  T
Q  172 caatagaaagagcggactgacgggcac 198  Q
    || |||||||||||||| | |||||||    
T  43974704 cagtagaaagagcggacaggcgggcac 43974730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 75 - 184
Target Start/End: Complemental strand, 22932179 - 22932071
Alignment:
Q  75 ttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcgcaa 174  Q
    ||||||||||||||||||| | ||||||||||||||||||| |||||  |||||||||||||||||| |   ||||| ||| |||||| ||||||||||     
T  22932179 ttttaattctaataattttctccaagatatatcaagaaaaa-ctaaacaaacattgatgttgaaaaatataatgtttatgagttacatgcgttagcgcag 22932081  T
Q  175 tagaaagagc 184  Q
    ||||||||||    
T  22932080 tagaaagagc 22932071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 7964863 - 7965011
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    |||||||||||||||||||||| | |||||||||||||| |||||||||| |||||||||||||||||||||   ||||| | | || ||| ||| || |    
T  7964863 ttcttttaattctaataattttctccaagatatatcaag-aaaaactaaa-caacattgatgttgaaaaacatactgtttataagttgcatgcgtaagtg 7964960  T
Q  172 caatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagtat 224  Q
    || | |||||||||||| ||||| |||    ||||| ||||||||||||||||    
T  7964961 cagtggaaagagcggacagacggacac--tcgtgcccgtctggacgctagtat 7965011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 123 - 205
Target Start/End: Complemental strand, 44508223 - 44508141
Alignment:
Q  123 caacattgatgttgaaaaacacgttgtttctgaattacatacgttagcgcaatagaaagagcggactgacgggcacgggagtg 205  Q
    ||||||||||||| |||||||  |||||| ||| |||||| |||||||||| |||||||||||||| |||||| |||| ||||    
T  44508223 caacattgatgttcaaaaacatattgtttgtgagttacatgcgttagcgcagtagaaagagcggacagacgggtacggaagtg 44508141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 16047108 - 16047165
Alignment:
Q  166 ttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagta 223  Q
    |||||||| |||||||||||||| ||| ||||||| |||||| |||||||||||||||    
T  16047108 ttagcgcagtagaaagagcggacagacaggcacggaagtgcccgtctggacgctagta 16047165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 22216487 - 22216423
Alignment:
Q  158 tacatacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    ||||||||||||||||||||||| | ||||| ||| |  ||||||||||| ||||||||||||||    
T  22216487 tacatacgttagcgcaatagaaaaaacggacagacagatacgggagtgcccgtctggacgctagt 22216423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 508323 - 508261
Alignment:
Q  161 atacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagta 223  Q
    ||||||||||||| || |||  |||||| |||||||||| ||||||| |||||||||||||||    
T  508323 atacgttagcgcagtaaaaaatgcggacagacgggcacgagagtgcccgtctggacgctagta 508261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 23120578 - 23120521
Alignment:
Q  166 ttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagta 223  Q
    |||||||| |||||| ||||||| || ||||||||||||| | |||||||||||||||    
T  23120578 ttagcgcagtagaaaaagcggacagatgggcacgggagtgtccgtctggacgctagta 23120521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 44967448 - 44967384
Alignment:
Q  132 tgttgaaaaacacgttgtttctgaattacatacgttagcgcaatagaaagagcggactgacgggc 196  Q
    ||||||||||||  |||||| ||| |||||| |||||||||| | |||||||||||| |||||||    
T  44967448 tgttgaaaaacatattgtttatgagttacatgcgttagcgcagtggaaagagcggacagacgggc 44967384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 205
Target Start/End: Complemental strand, 21349454 - 21349415
Alignment:
Q  166 ttagcgcaatagaaagagcggactgacgggcacgggagtg 205  Q
    |||||||| |||||||||||||| ||||||||||||||||    
T  21349454 ttagcgcagtagaaagagcggacagacgggcacgggagtg 21349415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 29634735 - 29634793
Alignment:
Q  165 gttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagta 223  Q
    ||||||||| ||| |||||| |||  ||||||||||||||||| ||||| |||||||||    
T  29634735 gttagcgcagtagtaagagcagacaaacgggcacgggagtgcccgtctgaacgctagta 29634793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 45537326 - 45537384
Alignment:
Q  165 gttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagta 223  Q
    ||||||||  |||||| |||| || ||||||||| |||||||| |||||||||||||||    
T  45537326 gttagcgcggtagaaaaagcgaacagacgggcacaggagtgcccgtctggacgctagta 45537384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 7e-39; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 64 - 222
Target Start/End: Original strand, 18811229 - 18811385
Alignment:
Q  64 tatgatatttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacata 163  Q
    |||||||||||||| ||||||||||||||| | ||||||||||||||||||| ||||| |||||||||||||||||||||   | ||| ||| ||||||     
T  18811229 tatgatatttctttgaattctaataattttctccaagatatatcaagaaaaa-ctaaa-caacattgatgttgaaaaacatactatttatgagttacatg 18811326  T
Q  164 cgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    |||||||||| ||||||||| |||| ||||||||||||| |||| ||||||||||||||    
T  18811327 cgttagcgcagtagaaagagtggacagacgggcacgggaatgcccgtctggacgctagt 18811385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 19112024 - 19112178
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    |||||||||||||||||||||| | ||||||||||||||||||| ||||| |||||||||||||||||||||  |||||| ||| ||||||  |||||||    
T  19112024 ttcttttaattctaataattttctccaagatatatcaagaaaaa-ctaaa-caacattgatgttgaaaaacatattgtttatgagttacatgtgttagcg 19112121  T
Q  172 caatagaaagagcggactgacggg-----cacgggagtgcctgtctggacgctagta 223  Q
    || |||||||||||||| ||||||     |||||||||||| ||||||| |||||||    
T  19112122 cagtagaaagagcggacagacgggtactccacgggagtgcccgtctggaagctagta 19112178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 50377475 - 50377325
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    |||||||||||||||||||||| | ||| ||||| ||||||| || |||| ||||||||||||| | |||||   ||||| ||| |||||| ||||| ||    
T  50377475 ttcttttaattctaataattttctccaaaatataccaagaaacaa-taaaccaacattgatgttcacaaacatactgtttatgagttacatgcgttaacg 50377377  T
Q  172 caatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagta 223  Q
    || |||||||||||||| |||||||||||||||||| ||||| |||||||||    
T  50377376 cagtagaaagagcggacagacgggcacgggagtgcccgtctgaacgctagta 50377325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 52374404 - 52374279
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    |||||||||||||||||||||| | |||||||||||||||||||  |||| |||||||||||||||||||||   ||||| ||| |||||| ||||||||    
T  52374404 ttcttttaattctaataattttctccaagatatatcaagaaaaag-taaa-caacattgatgttgaaaaacatactgtttatgagttacatgcgttagcg 52374307  T
Q  172 caatagaaagagcggactgacgggcacg 199  Q
    || |||||||||||||| ||||||||||    
T  52374306 cagtagaaagagcggacagacgggcacg 52374279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 83 - 223
Target Start/End: Original strand, 43593764 - 43593905
Alignment:
Q  83 ctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaa---cacgttgtttctgaattacatacgttagcgcaatagaa 179  Q
    ||||||||||| | |||||||||||||  |||||||||| || ||||||||||||||||   ||  |||||| ||| ||||||  ||||||||| |||||    
T  43593764 ctaataattttctccaagatatatcaa--aaaaactaaaccatcattgatgttgaaaaaaaacatattgtttatgagttacatgtgttagcgcagtagaa 43593861  T
Q  180 agagcggactgacgggcacgggagtgcctgtctggacgctagta 223  Q
    ||||||||| |||||||||||||||||| |||||||||||||||    
T  43593862 agagcggacagacgggcacgggagtgcccgtctggacgctagta 43593905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 1701311 - 1701212
Alignment:
Q  123 caacattgatgttgaaaaacacgttgtttctgaattacatacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    ||||||| | |||||||||||  |||||| ||| |||||| |||||||||||||||||||| |||  |||||||||||||||||| ||||||||||||||    
T  1701311 caacattaaggttgaaaaacatattgtttgtgagttacatgcgttagcgcaatagaaagagtggatagacgggcacgggagtgcccgtctggacgctagt 1701212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 116 - 222
Target Start/End: Complemental strand, 13757238 - 13757135
Alignment:
Q  116 actaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctgga 215  Q
    |||||||||||||||||||||||||| |||||   | ||| ||| || | |||| ||| ||||||||||| || |||||||||||||||||| |||||||    
T  13757238 actaaagcaacattgatgttgaaaaatacgtt---tatgagttatatgcattagtgcagtagaaagagcgaacagacgggcacgggagtgcccgtctgga 13757142  T
Q  216 cgctagt 222  Q
    |||||||    
T  13757141 cgctagt 13757135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 112 - 222
Target Start/End: Complemental strand, 16612332 - 16612222
Alignment:
Q  112 aaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtc 211  Q
    ||||| |||| ||||||| |||||||||||||  |||||| ||| |||||| |||||||||| |||||||||||||| |||||| | || |||| | |||    
T  16612332 aaaaattaaaccaacattaatgttgaaaaacatattgtttgtgagttacatgcgttagcgcagtagaaagagcggacagacgggtatggaagtgtccgtc 16612233  T
Q  212 tggacgctagt 222  Q
     ||||||||||    
T  16612232 cggacgctagt 16612222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 35577413 - 35577351
Alignment:
Q  161 atacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagta 223  Q
    |||||||||||||||| |||  |||||| |||||||||||||||||| |||||||||||||||    
T  35577413 atacgttagcgcaataaaaaatgcggacagacgggcacgggagtgcccgtctggacgctagta 35577351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 43593548 - 43593605
Alignment:
Q  83 ctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaa 141  Q
    ||||||||||| | |||||||||||||| |||||||||| || ||||||||||||||||    
T  43593548 ctaataattttctccaagatatatcaag-aaaaactaaaccatcattgatgttgaaaaa 43593605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 13757316 - 13757263
Alignment:
Q  16 cccataaatttcactcatgtttcatgtagattcatcttccataaaatatatgat 69  Q
    |||||| |||| |||||||||||||| | |||||||||||||| ||| ||||||    
T  13757316 cccatatattttactcatgtttcatgcatattcatcttccatagaatgtatgat 13757263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 16526368 - 16526433
Alignment:
Q  159 acatacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagtat 224  Q
    |||||| |||||||| |||||| | ||| | ||  |||||||||||||| ||||||||||||||||    
T  16526368 acatacattagcgcagtagaaaaaacggtcagataggcacgggagtgcccgtctggacgctagtat 16526433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 20702737 - 20702786
Alignment:
Q  163 acgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtct 212  Q
    |||||||||||||| ||||||||||  |||||||||| ||||||| ||||    
T  20702737 acgttagcgcaataaaaagagcggaaagacgggcacgtgagtgcccgtct 20702786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 39479906 - 39479861
Alignment:
Q  175 tagaaagagcggactgacgggcacgggagtgcctgtctggacgcta 220  Q
    |||||| ||||||| ||||| ||||||||||||||| |||||||||    
T  39479906 tagaaaaagcggacagacggacacgggagtgcctgtttggacgcta 39479861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 7e-39; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 72 - 222
Target Start/End: Original strand, 44201581 - 44201730
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    ||||| |||||||||||||||| | ||||||| ||||||||||| ||||| |||||||||||||||||||||  |||||| ||| ||| || ||||||||    
T  44201581 ttcttctaattctaataattttctgcaagatacatcaagaaaaa-ctaaaccaacattgatgttgaaaaacatattgtttatgagttatatgcgttagcg 44201679  T
Q  172 caatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    || |||||||||||||| |||||||||||||||||| |||| |||||||||    
T  44201680 cagtagaaagagcggacagacgggcacgggagtgcccgtctagacgctagt 44201730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 15723200 - 15723351
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    |||||||||||||||||||||| | || |||||| ||||||| || |||| ||||||||||||| |||||||   ||||| ||| |||||| ||||||||    
T  15723200 ttcttttaattctaataattttctccaggatataccaagaaacaa-taaaccaacattgatgttcaaaaacatactgtttatgagttacatgcgttagcg 15723298  T
Q  172 caatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagtat 224  Q
    || |||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  15723299 cagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagtat 15723351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 42958607 - 42958758
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    |||||||||||||||||||||| | ||| ||||||||||||||| ||||| |||||||||||||||||||||  ||||||  || |||||| |||||| |    
T  42958607 ttcttttaattctaataattttctccaatatatatcaagaaaaa-ctaaaccaacattgatgttgaaaaacatattgtttacgagttacatgcgttagtg 42958705  T
Q  172 -caatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagta 223  Q
     || |||||||||||||| |||||||||||||||||| ||||| || ||||||    
T  42958706 gcagtagaaagagcggacagacgggcacgggagtgccggtctgaacactagta 42958758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 72 - 222
Target Start/End: Original strand, 19193719 - 19193865
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    ||||| |||||||||||||||| | |||||||   ||||||||| ||||| ||||||| |||||||||||||  |||||| ||| |||||| ||||||||    
T  19193719 ttcttctaattctaataattttctgcaagata---caagaaaaa-ctaaaccaacattaatgttgaaaaacatattgtttatgagttacatgcgttagcg 19193814  T
Q  172 caatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    || |||||||||||||| ||| ||||| |||||||| ||||||||||||||    
T  19193815 cagtagaaagagcggacagacaggcacaggagtgcccgtctggacgctagt 19193865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 98 - 224
Target Start/End: Complemental strand, 46352014 - 46351888
Alignment:
Q  98 aagatatatcaagaaaaaactaaagcaacatt-gatgttgaaaaacacgttgtttctgaattacatacgttagcgcaatagaaagagcggactgacgggc 196  Q
    |||||||||||||||||| ||||| |||| || ||||||||||||||  || ||| | | ||||||  |||||||||||||||||||||||| || ||||    
T  46352014 aagatatatcaagaaaaa-ctaaaccaacttttgatgttgaaaaacatattatttataagttacatgtgttagcgcaatagaaagagcggacagatgggc 46351916  T
Q  197 acgggagtgcctgtctggacgctagtat 224  Q
    ||||||||||  ||||||||||||||||    
T  46351915 acgggagtgctcgtctggacgctagtat 46351888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 75 - 143
Target Start/End: Complemental strand, 24249681 - 24249613
Alignment:
Q  75 ttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaaca 143  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||  |||||||    
T  24249681 ttttaattctaataattttgttcaagatatatcaagaaaaaattaaatcaacattgatgtccaaaaaca 24249613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 18504884 - 18504814
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaaca 143  Q
    |||||||||||||||||||||| | ||||||||||||||| ||||||||| ||| |||||||||||||||||    
T  18504884 ttcttttaattctaataattttctccaagatatatcaaga-aaaactaaaacaatattgatgttgaaaaaca 18504814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 75 - 188
Target Start/End: Original strand, 46757962 - 46758075
Alignment:
Q  75 ttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcgcaa 174  Q
    ||||||| || |||||||| | |||||||||| || ||||||||||| |||||||||| || |||||||  |||||| ||| |||||| ||||||| ||     
T  46757962 ttttaatgcttataattttctccaagatatataaaaaaaaaactaaaccaacattgatattaaaaaacatattgtttatgagttacatgcgttagcccag 46758061  T
Q  175 tagaaagagcggac 188  Q
    |||||| |||||||    
T  46758062 tagaaatagcggac 46758075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 22045812 - 22045748
Alignment:
Q  64 tatgatatttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacat 128  Q
    |||||||||||||||| |||||||| |||||| ||||||| |||||||||||| |||| ||||||    
T  22045812 tatgatatttcttttagttctaatatttttgtccaagataaatcaagaaaaaagtaaaccaacat 22045748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 22033455 - 22033403
Alignment:
Q  64 tatgatatttcttttaattctaataattttgttcaagatatatcaagaaaaaa 116  Q
    |||||||||||||||| |||||||| |||||| ||||||| ||||||||||||    
T  22033455 tatgatatttcttttagttctaatatttttgtccaagataaatcaagaaaaaa 22033403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 2248099 - 2248044
Alignment:
Q  165 gttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgcta 220  Q
    ||||||||| |||||||||||||| ||||| |||||||||| | ||||||||||||    
T  2248099 gttagcgcagtagaaagagcggacagacggacacgggagtgtccgtctggacgcta 2248044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 46123005 - 46123067
Alignment:
Q  161 atacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagta 223  Q
    ||||||||||||| || |||  ||| || |||||||||||||||||| |||||||||||||||    
T  46123005 atacgttagcgcagtaaaaaatgcgaacagacgggcacgggagtgcccgtctggacgctagta 46123067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 143
Target Start/End: Original strand, 7487293 - 7487367
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatat---caagaaaaaactaaagcaacattgatgttgaaaaaca 143  Q
    |||||||||||||||||||||| |  |||||||||    || | |||||||||||||| ||||||||||||||||    
T  7487293 ttcttttaattctaataattttctcgaagatatatataaaaaagaaaactaaagcaacgttgatgttgaaaaaca 7487367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 25613993 - 25614040
Alignment:
Q  158 tacatacgttagcgcaatagaaagagcggactgacgggcacgggagtg 205  Q
    ||||| |||||||||| |||||||||| ||| ||||||||||||||||    
T  25613993 tacatgcgttagcgcagtagaaagagcagacagacgggcacgggagtg 25614040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 7487149 - 7487191
Alignment:
Q  16 cccataaatttcactcatgtttcatgtagattcatcttccata 58  Q
    ||||||||| |||||||||||||||||| ||||||| ||||||    
T  7487149 cccataaatgtcactcatgtttcatgtatattcatcctccata 7487191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 43097919 - 43097960
Alignment:
Q  65 atgatatttcttttaattctaataattttgttcaagatatat 106  Q
    ||||| || |||||||||||||||||||||| ||||||||||    
T  43097919 atgatcttccttttaattctaataattttgtccaagatatat 43097960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 72 - 233
Target Start/End: Complemental strand, 6583 - 6424
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    |||||||||||||||||||||| | |||||||||||| |||||| ||||| ||||||| |||||||||||||  || ||| ||| |||||| ||||||||    
T  6583 ttcttttaattctaataattttctccaagatatatcatgaaaaa-ctaaa-caacattaatgttgaaaaacatattatttatgagttacatgcgttagcg 6486  T
Q  172 caatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagtatcaataatgt 233  Q
    ||||||||||||||||| ||| |||||||||||||| ||||||| ||||||  |||||||||    
T  6485 caatagaaagagcggacagacaggcacgggagtgcccgtctggatgctagttgcaataatgt 6424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 72 - 202
Target Start/End: Complemental strand, 9087 - 8958
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    |||||||||||||||||||||| | |||||||||| |||||||| ||||| |||||||||||||||||||||| |||||| | | |||||| ||||||||    
T  9087 ttcttttaattctaataattttctccaagatatattaagaaaaa-ctaaaccaacattgatgttgaaaaacacattgttttttatttacatgcgttagcg 8989  T
Q  172 caatagaaagagcggactgacgggcacggga 202  Q
    || |||||||||||||| |||||||||||||    
T  8988 cagtagaaagagcggacagacgggcacggga 8958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 68; Significance: 6e-30; HSPs: 2)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 13728 - 13602
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    |||||| ||||||||||||||| | |||||||||||| |||||||||||  |||| ||||||||||||||||  |||||| ||| |||||| ||||||||    
T  13728 ttctttcaattctaataattttctccaagatatatca-gaaaaaactaacccaaccttgatgttgaaaaacatattgtttatgagttacatgcgttagcg 13630  T
Q  172 caatagaaagagcggactgacgggcacg 199  Q
    || |||||||||||||| ||||||||||    
T  13629 cagtagaaagagcggacagacgggcacg 13602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 13582 - 13518
Alignment:
Q  132 tgttgaaaaacacgttgtttctgaattacatacgttagcgcaatagaaagagcggactgacgggc 196  Q
    ||||||||||||  |||||| ||| |||||| |||||||||| | |||||||||||| |||||||    
T  13582 tgttgaaaaacatattgtttatgagttacatgcgttagcgcagtggaaagagcggacagacgggc 13518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 68; Significance: 6e-30; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 72 - 227
Target Start/End: Complemental strand, 21856 - 21702
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    |||||||||||||||||||||| | ||||||||||||||| |||||||||  ||||||||||||||||||||   ||||| ||| |||||| ||||||||    
T  21856 ttcttttaattctaataattttctccaagatatatcaaga-aaaactaaacaaacattgatgttgaaaaacataatgtttatgagttacatgcgttagcg 21758  T
Q  172 caatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagtatcaa 227  Q
     | |||||| |||||||    ||||||||||||||| ||||||| |||||| ||||    
T  21757 tagtagaaaaagcggacaactgggcacgggagtgcccgtctggatgctagtttcaa 21702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 29138 - 29293
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatat---caagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgtta 168  Q
    |||||||||||||||||||||| |  |||||||||    || | |||||||||||||| ||||||||||||||||   || || ||| |||||| |||||    
T  29138 ttcttttaattctaataattttctcgaagatatatataaaaaagaaaactaaagcaacgttgatgttgaaaaacatactgcttatgagttacatgcgtta 29237  T
Q  169 gcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagtat 224  Q
    ||||  |||||||||||||| ||||| |||||||||||| ||||||||| ||||||    
T  29238 gcgcggtagaaagagcggacagacggacacgggagtgcccgtctggacgatagtat 29293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 4e-25; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 7567113 - 7566963
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    |||||||||||||||||||||| |  |||||||||||||| |||||||||  ||||||||||||||||||||   ||||  ||| || ||| ||||||||    
T  7567113 ttcttttaattctaataattttttctaagatatatcaaga-aaaactaaacaaacattgatgttgaaaaacataatgttcatgatttgcatgcgttagcg 7567015  T
Q  172 caatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagta 223  Q
    ||  |||||| |||||  |||||| ||||||||||  |||||||||||||||    
T  7567014 cagcagaaagggcggatagacgggtacgggagtgctcgtctggacgctagta 7566963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 9767914 - 9767990
Alignment:
Q  146 ttgtttctgaattacatacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    |||||| ||| ||| ||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||    
T  9767914 ttgtttatgagttatatacgttagcgcagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 9767990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 46124113 - 46124028
Alignment:
Q  137 aaaaacacgttgtttctgaattacatacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    |||||||  |||||| ||| ||| ||||||||||||| |||||| ||||||| |||||||||||||||||| ||||| ||||||||    
T  46124113 aaaaacatattgtttatgagttatatacgttagcgcagtagaaaaagcggacagacgggcacgggagtgcccgtctgaacgctagt 46124028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 18740861 - 18740927
Alignment:
Q  158 tacatacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagtat 224  Q
    ||||||| |||||||| |||||||||||||| |||| |||||| |||||| ||||||||||||||||    
T  18740861 tacatacattagcgcattagaaagagcggacagacgcgcacggaagtgcccgtctggacgctagtat 18740927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 11028135 - 11028071
Alignment:
Q  158 tacatacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagta 223  Q
    ||||| |||||||||| |||||| ||||||| |||||||||||||||||| |||||||||||||||    
T  11028135 tacatgcgttagcgcagtagaaaaagcggacagacgggcacgggagtgcc-gtctggacgctagta 11028071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 41935243 - 41935300
Alignment:
Q  165 gttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    |||| |||| |||||||||||||| |||||||||||||||||| ||||||||||||||    
T  41935243 gttaacgcagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 41935300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 53157340 - 53157279
Alignment:
Q  161 atacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    |||| |||||||| |||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  53157340 atacattagcgcagtagaaagagcggacagacgggcacgagagtgcccgtctggacgctagt 53157279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 15212795 - 15212737
Alignment:
Q  164 cgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    |||||||||| |||||| ||||||| ||||||||||||||||||  |||||||||||||    
T  15212795 cgttagcgcagtagaaaaagcggacagacgggcacgggagtgcccatctggacgctagt 15212737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 15252014 - 15251956
Alignment:
Q  164 cgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    |||||||||| |||||| ||||||| ||||||||||||||||||  |||||||||||||    
T  15252014 cgttagcgcagtagaaaaagcggacagacgggcacgggagtgcccatctggacgctagt 15251956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 6079879 - 6079939
Alignment:
Q  164 cgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagtat 224  Q
    |||||||||| |||||| ||||||| ||||||||||| |||||| ||||| ||||||||||    
T  6079879 cgttagcgcagtagaaaaagcggacagacgggcacggaagtgccggtctgaacgctagtat 6079939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 21972702 - 21972645
Alignment:
Q  165 gttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    ||||||| | |||||| |||||||  ||||||||||||||||| ||||||||||||||    
T  21972702 gttagcgtagtagaaaaagcggacaaacgggcacgggagtgcccgtctggacgctagt 21972645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 21995133 - 21995076
Alignment:
Q  165 gttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    ||||||| | |||||| |||||||  ||||||||||||||||| ||||||||||||||    
T  21995133 gttagcgtagtagaaaaagcggacaaacgggcacgggagtgcccgtctggacgctagt 21995076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 14163470 - 14163410
Alignment:
Q  163 acgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagta 223  Q
    |||||| |||| || ||||||||||| |||||||||| ||||||| ||||| |||||||||    
T  14163470 acgttaacgcagtaaaaagagcggacagacgggcacgagagtgcccgtctgaacgctagta 14163410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 51425364 - 51425428
Alignment:
Q  166 ttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagtatcaataa 230  Q
    ||||| || |||||||||||||| |||||||||| || ||||  ||||||||||||||| |||||    
T  51425364 ttagcacagtagaaagagcggacagacgggcacgagaatgcccatctggacgctagtattaataa 51425428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 22155434 - 22155376
Alignment:
Q  164 cgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    |||||||| | |||||| | ||||| |||||||||||||||| | ||||||||||||||    
T  22155434 cgttagcgtagtagaaaaaacggacagacgggcacgggagtgtccgtctggacgctagt 22155376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 34493448 - 34493501
Alignment:
Q  159 acatacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtct 212  Q
    |||| |||||||| |||||||||||||||| || |||||||  |||||||||||    
T  34493448 acatgcgttagcgtaatagaaagagcggacagatgggcacgatagtgcctgtct 34493501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 32189 - 32338
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    |||||||||||||||||||||| | |||||||||||||| |||| |||||  |||||||||||||||||| |   | ||| ||| |||||| ||||||||    
T  32189 ttcttttaattctaataattttctccaagatatatcaag-aaaacctaaacaaacattgatgttgaaaaatataatatttatgagttacatgcgttagcg 32287  T
Q  172 caatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagtat 224  Q
    || |||||| ||||||| |||||||||   |||||| ||||| ||||||||||    
T  32288 cagtagaaaaagcggacagacgggcac--tagtgcccgtctgtacgctagtat 32338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 72 - 180
Target Start/End: Original strand, 36890 - 36997
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacatacgttagcg 171  Q
    |||||||||||||||||||||| | |||||||||| |||||||| ||||| |||||||||||||||||||||   ||||| ||| |||||| ||||||||    
T  36890 ttcttttaattctaataattttctccaagatatattaagaaaaa-ctaaaccaacattgatgttgaaaaacatactgtttatgagttacatgcgttagcg 36988  T
Q  172 caatagaaa 180  Q
    || ||||||    
T  36989 cagtagaaa 36997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 56; Significance: 9e-23; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 71 - 162
Target Start/End: Original strand, 137 - 227
Alignment:
Q  71 tttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaacacgttgtttctgaattacat 162  Q
    |||||||||||| | ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||  |||||| ||| ||||||    
T  137 tttcttttaattattataattttgttcaagatatatcaag-aaaaactaaatcaacattgatgttgaaaaacatattgtttatgagttacat 227  T

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Target: scaffold0337; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 789 - 849
Alignment:
Q  164 cgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagtat 224  Q
    |||||||||| |||||| ||||||| |||||||||||||||||| ||||||||||||||||    
T  789 cgttagcgcagtagaaaaagcggacagacgggcacgggagtgcccgtctggacgctagtat 849  T

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Target: scaffold0077 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 52532 - 52596
Alignment:
Q  158 tacatacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    ||||| |||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||    
T  52532 tacatgcgttagcgcagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 52596  T

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Target: scaffold0072 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 46345 - 46284
Alignment:
Q  161 atacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    ||||||||||||| |||||| ||||||| |||||||||||||||||| ||||||||||||||    
T  46345 atacgttagcgcagtagaaaaagcggacagacgggcacgggagtgcccgtctggacgctagt 46284  T

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Target: scaffold0553 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 6613 - 6549
Alignment:
Q  158 tacatacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    |||||||||||||||| |||||| ||||||| |||||| ||||||||||| ||||||||||||||    
T  6613 tacatacgttagcgcagtagaaaaagcggacagacgggtacgggagtgcccgtctggacgctagt 6549  T

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Target: scaffold0726 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 143
Target Start/End: Original strand, 5591 - 5661
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaaca 143  Q
    |||||||||||||||||||||| | |||||||||||||  ||||||||||  ||||||||||||||||||||    
T  5591 ttcttttaattctaataattttctccaagatatatcaatgaaaaactaaa-taacattgatgttgaaaaaca 5661  T

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Target: scaffold0281 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 4581 - 4642
Alignment:
Q  158 tacatacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgct 219  Q
    |||||||||||||||| ||||||||| |||| ||||||||||||||| || |||||||||||    
T  4581 tacatacgttagcgcagtagaaagagtggacagacgggcacgggagtacccgtctggacgct 4642  T

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Target: scaffold0179 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 28436 - 28500
Alignment:
Q  158 tacatacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    ||||||| |||||||| |||||| ||||||  |||||||| ||||||||||||||||||||||||    
T  28436 tacatacattagcgcagtagaaaaagcggatagacgggcatgggagtgcctgtctggacgctagt 28500  T

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Target: scaffold0039 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 102296 - 102232
Alignment:
Q  158 tacatacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagt 222  Q
    ||||| |||| ||||| ||||||||||||||  ||||||||||||||||| ||||||||||||||    
T  102296 tacatgcgttggcgcagtagaaagagcggacaaacgggcacgggagtgcccgtctggacgctagt 102232  T

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Target: scaffold0039; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 84238 - 84297
Alignment:
Q  164 cgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagta 223  Q
    |||| |||||||||||| ||||||| || ||||||||||||||| |||| ||||||||||    
T  84238 cgtttgcgcaatagaaaaagcggacagatgggcacgggagtgcccgtctcgacgctagta 84297  T

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Target: scaffold0760 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 143
Target Start/End: Original strand, 152 - 222
Alignment:
Q  72 ttcttttaattctaataattttgttcaagatatatcaagaaaaaactaaagcaacattgatgttgaaaaaca 143  Q
    ||||| |||||||||||||||| |  || ||||||||| ||||| ||||| |||||||||||||||||||||    
T  152 ttcttctaattctaataattttctcaaatatatatcaataaaaa-ctaaaccaacattgatgttgaaaaaca 222  T

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Target: scaffold0422 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 10295 - 10352
Alignment:
Q  59 aaatatatgatatttcttttaattctaataattttgttcaagatatatcaagaaaaaa 116  Q
    |||| |||||||||||||||||||||||||| ||| | ||| | ||||||||||||||    
T  10295 aaatgtatgatatttcttttaattctaataaatttttccaaaacatatcaagaaaaaa 10352  T

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Target: scaffold0086 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 201
Target Start/End: Original strand, 42467 - 42510
Alignment:
Q  158 tacatacgttagcgcaatagaaagagcggactgacgggcacggg 201  Q
    |||||||||||||||| |||||| ||||||| ||||||||||||    
T  42467 tacatacgttagcgcactagaaaaagcggacagacgggcacggg 42510  T

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Target: scaffold0320 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 14208 - 14265
Alignment:
Q  166 ttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgctagta 223  Q
    |||||| | |||||||||||||| |||||||||| |||||||  |||| |||||||||    
T  14208 ttagcgtagtagaaagagcggacagacgggcacgagagtgcccatctgaacgctagta 14265  T

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Target: scaffold0220 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 28561 - 28500
Alignment:
Q  158 tacatacgttagcgcaatagaaagagcggactgacgggcacgggagtgcctgtctggacgct 219  Q
    |||||||||||||||| |||||| |  |||| || ||||||| ||||||| |||||||||||    
T  28561 tacatacgttagcgcactagaaaaataggacagaggggcacgagagtgcccgtctggacgct 28500  T

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