View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1594-INSERTION-27 (Length: 724)

Name: NF1594-INSERTION-27
Description: NF1594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1594-INSERTION-27
NF1594-INSERTION-27
[»] chr7 (9 HSPs)
chr7 (183-513)||(22683471-22683809)
chr7 (572-724)||(22683291-22683443)
chr7 (8-125)||(22683861-22683978)
chr7 (572-708)||(22694879-22695015)
chr7 (8-75)||(22695319-22695386)
chr7 (188-260)||(7133257-7133327)
chr7 (185-234)||(29812667-29812716)
chr7 (327-513)||(22695056-22695242)
chr7 (183-234)||(23751905-23751956)
[»] chr8 (5 HSPs)
chr8 (20-115)||(36252199-36252295)
chr8 (185-234)||(39820436-39820485)
chr8 (327-435)||(36252050-36252160)
chr8 (185-234)||(13845241-13845290)
chr8 (185-230)||(28883885-28883930)
[»] chr3 (6 HSPs)
chr3 (8-75)||(31891094-31891161)
chr3 (185-248)||(25892467-25892528)
chr3 (183-234)||(15864838-15864889)
chr3 (183-234)||(25365467-25365518)
chr3 (183-253)||(25652017-25652085)
chr3 (185-234)||(3730168-3730217)
[»] chr2 (4 HSPs)
chr2 (185-234)||(25544488-25544537)
chr2 (184-234)||(23354655-23354705)
chr2 (184-230)||(23355002-23355048)
chr2 (184-234)||(10535762-10535812)
[»] chr5 (3 HSPs)
chr5 (185-260)||(43554528-43554601)
chr5 (185-268)||(25863211-25863292)
chr5 (187-234)||(39696002-39696049)
[»] chr4 (4 HSPs)
chr4 (11-71)||(31559472-31559532)
chr4 (183-234)||(3144655-3144706)
chr4 (183-234)||(20743281-20743332)
chr4 (185-230)||(31243555-31243600)
[»] chr6 (7 HSPs)
chr6 (183-234)||(6389748-6389799)
chr6 (183-234)||(34446570-34446621)
chr6 (183-234)||(12235522-12235573)
chr6 (184-227)||(19602191-19602234)
chr6 (183-233)||(6299517-6299567)
chr6 (183-233)||(6306327-6306377)
chr6 (184-234)||(17168466-17168516)
[»] chr1 (1 HSPs)
chr1 (183-254)||(42004932-42005001)
[»] scaffold0778 (1 HSPs)
scaffold0778 (184-233)||(4412-4461)


Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 183 - 513
Target Start/End: Complemental strand, 22683809 - 22683471
Alignment:
Q  183 ggataataatttgaggatatgatataattcagtgcaatcataggtgtcgtgtgtcagtgtc------ggacatcgacgggtgtcttacaccgtgtcggtg 276  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||| ||||||| ||||||    
T  22683809 ggataataatttgagaatatgatataattcagtgcaatcataggtgtcgtgtgtcagtgtcagtgtcggacatcgacgggtgtctgacaccgtatcggtg 22683710  T
Q  277 cttcataggggttatatatatttttaatctttataattatannnnnnnnn--aaatttagcccctacattcattttaattgaagtccttattttgaaatc 374  Q
    |||||||||||||||||||||||||||||||||||||| |            ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22683709 cttcataggggttatatatatttttaatctttataatttttattttctttttaaatttagcccctacattcatttcaattgaagtccttattttgaaatc 22683610  T
Q  375 attttaccaaaaatgtgttttttggccctctagaaactaaatagcctctttaaaagtaaaataaggactaaaattgaacaaaatatctgtacaggctaaa 474  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22683609 attttaccaaaaatgtgttttttgtccctctagaaactaaatagcctcttcaaaagtaaaataaggactaaaattgaacaaactatctgtacaggctaaa 22683510  T
Q  475 catgaaaagactttaattttatagagactaaaaatatgt 513  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  22683509 catgaaaagactttaattttatagagactaaaaacatgt 22683471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 572 - 724
Target Start/End: Complemental strand, 22683443 - 22683291
Alignment:
Q  572 cagataacaaattgcattttgattattattgtgggggtgataagtggtatcataggaacatactcagctactgcaagaatatttggcgatggagactaaa 671  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  22683443 cagataacaaattgcattttgattattattgtgggggtgataagtggtatcataggaacatactcagctacttcaagaatatttggcgatggagattaaa 22683344  T
Q  672 tgatagtcttattttctttgtaaaactcacttcttttcttggcttgtgttgga 724  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22683343 tgatagtgttattttctttgtaaaactcacttcttttcttggcttgtgttgga 22683291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 22683978 - 22683861
Alignment:
Q  8 tatatatccttgtgcatgttatcttaagctacatagtggcagattatcaactatgcaggtatttcaatcagctcttctttataatacttctgttttatat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22683978 tatatatccttgtgcatgttatcttaagctacatagtggcagattatcaactatgcaggtatttcaatcagctcttctttataatacttctgttttatat 22683879  T
Q  108 tagagttacgctatgaag 125  Q
    ||| ||||| ||||||||    
T  22683878 tagggttacactatgaag 22683861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 572 - 708
Target Start/End: Complemental strand, 22695015 - 22694879
Alignment:
Q  572 cagataacaaattgcattttgattattattgtgggggtgataagtggtatcataggaacatactcagctactgcaagaatatttggcgatggagactaaa 671  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  22695015 cagataacaagttgcattttgattattattgttggggtgataagtggtatcttaggaacatactcagctactacaagaatatttggcgatggagactaaa 22694916  T
Q  672 tgatagtcttattttctttgtaaaactcacttctttt 708  Q
    ||||||| ||| | |  |||||||| |||||| ||||    
T  22694915 tgatagtattaatattattgtaaaagtcacttttttt 22694879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 22695386 - 22695319
Alignment:
Q  8 tatatatccttgtgcatgttatcttaagctacatagtggcagattatcaactatgcaggtatttcaat 75  Q
    |||||||||||||||||||||||| |||||||| ||||||| |||||||| |||||||||||||||||    
T  22695386 tatatatccttgtgcatgttatctcaagctacaaagtggcaaattatcaaatatgcaggtatttcaat 22695319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 7133327 - 7133257
Alignment:
Q  188 ataatttgaggatatgatataattcagtgcaatcataggtgtcgtgtgtcagtgtcggacatcgacgggtgtc 260  Q
    |||||||||| | |||| ||||||||||| |||||||||||  ||||||| |||||||||| ||||| |||||    
T  7133327 ataatttgagaaaatgacataattcagtgtaatcataggtg--gtgtgtcggtgtcggacaccgacgcgtgtc 7133257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 29812716 - 29812667
Alignment:
Q  185 ataataatttgaggatatgatataattcagtgcaatcataggtgtcgtgt 234  Q
    ||||||||||||| | ||||||||||| |||| |||||||||||||||||    
T  29812716 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgt 29812667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 327 - 513
Target Start/End: Complemental strand, 22695242 - 22695056
Alignment:
Q  327 aaatttagcccctacattcattttaattgaagtccttattttgaaatcattttac-caaaaat----gtgttttttggccctctagaaactaaatagcct 421  Q
    |||||| | |||||||| ||||| |||| |||||||| |||||||| ||||||   |||||||    |||||||| | |||||   ||||||||||| ||    
T  22695242 aaatttggtccctacatacatttcaatttaagtccttgttttgaaaccattttttacaaaaatatgtgtgtttttagtccctc---aaactaaatagtct 22695146  T
Q  422 ctttaaaagtaaaataaggactaaaattgaacaaaatatctgtacaggctaaacatgaaaagactttaattttatagagactaaaaatatgt 513  Q
    ||| ||||||||||  |  |||||||||||| ||| | | |||| | ||||||| |||| |||||| ||||| | |||||||||||||||||    
T  22695145 ctt-aaaagtaaaaagaa-actaaaattgaataaattttttgtagaagctaaacttgaacagacttaaatttcagagagactaaaaatatgt 22695056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 23751905 - 23751956
Alignment:
Q  183 ggataataatttgaggatatgatataattcagtgcaatcataggtgtcgtgt 234  Q
    ||||||||||||||  | ||||||||||| |||| |||||||||||||||||    
T  23751905 ggataataatttgataaaatgatataatttagtgtaatcataggtgtcgtgt 23751956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 8e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 36252295 - 36252199
Alignment:
Q  20 tgcatgttatcttaagctacatagtggcagattatcaactatgcaggtatttcaatcagctcttctttataatacttc--tgttttatattagagtta 115  Q
    |||||||||||| |||||||| | |||||||||||||||||||||||||||||||| | |||||||||| |||  |||  ||||||||||||||||||    
T  36252295 tgcatgttatctcaagctacaaa-tggcagattatcaactatgcaggtatttcaataatctcttctttacaatcattctttgttttatattagagtta 36252199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 39820436 - 39820485
Alignment:
Q  185 ataataatttgaggatatgatataattcagtgcaatcataggtgtcgtgt 234  Q
    ||||||||||||| | ||||||||||| |||| |||||||||||||||||    
T  39820436 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgt 39820485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 327 - 435
Target Start/End: Complemental strand, 36252160 - 36252050
Alignment:
Q  327 aaatttagcccctacattcattttaattgaagtccttattttgaaatcatttt--accaaaaatgtgt---tttttggccctctagaaactaaatagcct 421  Q
    |||||| | |||||||| ||||| |||| |||||||| |||||||| ||||||  || ||| ||||||   |||||| |||||   ||||||||||| ||    
T  36252160 aaatttggtccctacatacatttcaatttaagtccttgttttgaaaccattttttacaaaatatgtgtgtttttttgtccctc---aaactaaatagtct 36252064  T
Q  422 ctttaaaagtaaaa 435  Q
    ||||||||||||||    
T  36252063 ctttaaaagtaaaa 36252050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 13845241 - 13845290
Alignment:
Q  185 ataataatttgaggatatgatataattcagtgcaatcataggtgtcgtgt 234  Q
    ||||||||||||| | ||||||||||| || | |||||||||||||||||    
T  13845241 ataataatttgagaaaatgatataatttagagtaatcataggtgtcgtgt 13845290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 28883930 - 28883885
Alignment:
Q  185 ataataatttgaggatatgatataattcagtgcaatcataggtgtc 230  Q
    ||||||||||||| | |||| ||||||||||| |||||||||||||    
T  28883930 ataataatttgagaaaatgacataattcagtggaatcataggtgtc 28883885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 31891161 - 31891094
Alignment:
Q  8 tatatatccttgtgcatgttatcttaagctacatagtggcagattatcaactatgcaggtatttcaat 75  Q
    |||||||||||||||||||||||| |||||||| | || | |||||||||||||||||||||||||||    
T  31891161 tatatatccttgtgcatgttatctcaagctacaaaatgactgattatcaactatgcaggtatttcaat 31891094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 25892467 - 25892528
Alignment:
Q  185 ataataatttgaggatatgatataattcagtgcaatcataggtgtcgtgtgtcagtgtcggaca 248  Q
    |||||||||| || | |||||||||||||||| |||||||||||||  ||||||||||||||||    
T  25892467 ataataatttaagaaaatgatataattcagtgtaatcataggtgtc--gtgtcagtgtcggaca 25892528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 15864838 - 15864889
Alignment:
Q  183 ggataataatttgaggatatgatataattcagtgcaatcataggtgtcgtgt 234  Q
    ||||||||||||||  | ||||||||||| |||| |||||||||||||||||    
T  15864838 ggataataatttgaaaaaatgatataatttagtgtaatcataggtgtcgtgt 15864889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 25365467 - 25365518
Alignment:
Q  183 ggataataatttgaggatatgatataattcagtgcaatcataggtgtcgtgt 234  Q
    ||||||||||||||| |||||| ||||||| ||| ||||||| |||||||||    
T  25365467 ggataataatttgagaatatgacataattcggtgtaatcataagtgtcgtgt 25365518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 25652085 - 25652017
Alignment:
Q  183 ggataataatttgaggatatgatataattcagtgcaatcataggtgtcgtgtgtcagtgtcggacatcgac 253  Q
    ||||||||||||||| | |||||||||||||||| | | ||||||||  ||||||||||| ||||| ||||    
T  25652085 ggataataatttgagaaaatgatataattcagtgtagttataggtgt--tgtgtcagtgttggacaccgac 25652017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 3730217 - 3730168
Alignment:
Q  185 ataataatttgaggatatgatataattcagtgcaatcataggtgtcgtgt 234  Q
    |||||||||||||   |||| ||||||||||| |||||||||||||||||    
T  3730217 ataataatttgagataatgacataattcagtgtaatcataggtgtcgtgt 3730168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 25544488 - 25544537
Alignment:
Q  185 ataataatttgaggatatgatataattcagtgcaatcataggtgtcgtgt 234  Q
    ||||||||||||| | |||||||||||||||| |||||||||||||||||    
T  25544488 ataataatttgagaaaatgatataattcagtgtaatcataggtgtcgtgt 25544537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 23354705 - 23354655
Alignment:
Q  184 gataataatttgaggatatgatataattcagtgcaatcataggtgtcgtgt 234  Q
    |||||||||||||| | ||||||||||| |||| |||||||||||||||||    
T  23354705 gataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgt 23354655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 23355048 - 23355002
Alignment:
Q  184 gataataatttgaggatatgatataattcagtgcaatcataggtgtc 230  Q
    |||||||||||||| | ||||||||||| ||||||||||||||||||    
T  23355048 gataataatttgagaaaatgatataatttagtgcaatcataggtgtc 23355002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 10535812 - 10535762
Alignment:
Q  184 gataataatttgaggatatgatataattcagtgcaatcataggtgtcgtgt 234  Q
    |||||||||||||| | |||| ||||||||||| ||||||| |||||||||    
T  10535812 gataataatttgagaaaatgacataattcagtgtaatcataagtgtcgtgt 10535762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 260
Target Start/End: Original strand, 43554528 - 43554601
Alignment:
Q  185 ataataatttgaggatatgatataattcagtgcaatcataggtgtcgtgtgtcagtgtcggacatcgacgggtgtc 260  Q
    ||||||||||||| | ||||||||||| |||| |||||||||||||  ||||| |||||||||| ||||| |||||    
T  43554528 ataataatttgagaaaatgatataatttagtgtaatcataggtgtc--gtgtcggtgtcggacaccgacgcgtgtc 43554601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 25863211 - 25863292
Alignment:
Q  185 ataataatttgaggatatgatataattcagtgcaatcataggtgtcgtgtgtcagtgtcggacatcgacgggtgtcttacaccg 268  Q
    ||||||||||||| | |||||||||||||||| ||| ||| |||||  ||||||||||||| || ||| | |||||| ||||||    
T  25863211 ataataatttgagaaaatgatataattcagtgtaattataagtgtc--gtgtcagtgtcgggcaccgatgcgtgtctgacaccg 25863292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 39696049 - 39696002
Alignment:
Q  187 aataatttgaggatatgatataattcagtgcaatcataggtgtcgtgt 234  Q
    ||||||||||| | ||||||||||| |||| |||||||||||||||||    
T  39696049 aataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgt 39696002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 31559472 - 31559532
Alignment:
Q  11 atatccttgtgcatgttatcttaagctacatagtggcagattatcaactatgcaggtattt 71  Q
    ||||||||||||||||||||| ||| |||| |||| || |||||||| |||||||||||||    
T  31559472 atatccttgtgcatgttatctcaaggtacaaagtgacaaattatcaattatgcaggtattt 31559532  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 3144706 - 3144655
Alignment:
Q  183 ggataataatttgaggatatgatataattcagtgcaatcataggtgtcgtgt 234  Q
    |||||||||||| || | ||||||||||| |||| |||||||||||||||||    
T  3144706 ggataataatttcagaaaatgatataatttagtgtaatcataggtgtcgtgt 3144655  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 20743332 - 20743281
Alignment:
Q  183 ggataataatttgaggatatgatataattcagtgcaatcataggtgtcgtgt 234  Q
    ||||||||||||||| | |||| ||||||||||| |||||||||||| ||||    
T  20743332 ggataataatttgagaaaatgacataattcagtgtaatcataggtgttgtgt 20743281  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 31243600 - 31243555
Alignment:
Q  185 ataataatttgaggatatgatataattcagtgcaatcataggtgtc 230  Q
    ||||||||||||| | |||| ||||||||||| |||||||||||||    
T  31243600 ataataatttgagaaaatgacataattcagtgtaatcataggtgtc 31243555  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 6389748 - 6389799
Alignment:
Q  183 ggataataatttgaggatatgatataattcagtgcaatcataggtgtcgtgt 234  Q
    ||||||||||||||| | ||||||||||| |||| |||||||||||||||||    
T  6389748 ggataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgt 6389799  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 34446570 - 34446621
Alignment:
Q  183 ggataataatttgaggatatgatataattcagtgcaatcataggtgtcgtgt 234  Q
    ||||||||||||||| | |||| ||||||||||| |||||||||||||||||    
T  34446570 ggataataatttgagaaaatgacataattcagtgtaatcataggtgtcgtgt 34446621  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 12235573 - 12235522
Alignment:
Q  183 ggataataatttgaggatatgatataattcagtgcaatcataggtgtcgtgt 234  Q
    ||||||||||| ||| | |||| ||||||||||| |||||||||||||||||    
T  12235573 ggataataattagagaaaatgacataattcagtgtaatcataggtgtcgtgt 12235522  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 19602234 - 19602191
Alignment:
Q  184 gataataatttgaggatatgatataattcagtgcaatcataggt 227  Q
    |||||||||||||| | |||||||||||||||| ||||||||||    
T  19602234 gataataatttgagaaaatgatataattcagtgtaatcataggt 19602191  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 6299517 - 6299567
Alignment:
Q  183 ggataataatttgaggatatgatataattcagtgcaatcataggtgtcgtg 233  Q
    ||||||||||||||| | ||||||||||||| || ||| ||||||||||||    
T  6299517 ggataataatttgagaaaatgatataattcaatgtaatgataggtgtcgtg 6299567  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 6306327 - 6306377
Alignment:
Q  183 ggataataatttgaggatatgatataattcagtgcaatcataggtgtcgtg 233  Q
    ||||||||||||||| | ||||||||||||| || ||| ||||||||||||    
T  6306327 ggataataatttgagaaaatgatataattcaatgtaatgataggtgtcgtg 6306377  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 17168516 - 17168466
Alignment:
Q  184 gataataatttgaggatatgatataattcagtgcaatcataggtgtcgtgt 234  Q
    |||||||||||||| | ||||||||||| |||| ||| |||||||||||||    
T  17168516 gataataatttgagaaaatgatataatttagtgtaataataggtgtcgtgt 17168466  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 183 - 254
Target Start/End: Complemental strand, 42005001 - 42004932
Alignment:
Q  183 ggataataatttgaggatatgatataattcagtgcaatcataggtgtcgtgtgtcagtgtcggacatcgacg 254  Q
    ||||||||||||||| | |||| |||||| |||| ||||||||||||  |||||| |||||||||| |||||    
T  42005001 ggataataatttgagaaaatgacataatttagtgtaatcataggtgt--tgtgtcggtgtcggacaccgacg 42004932  T

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Target: scaffold0778 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 4412 - 4461
Alignment:
Q  184 gataataatttgaggatatgatataattcagtgcaatcataggtgtcgtg 233  Q
    ||||||||||| || ||||||||||||||||||  ||||||| |||||||    
T  4412 gataataatttaagaatatgatataattcagtgtcatcatagatgtcgtg 4461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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