View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1594-INSERTION-3 (Length: 1009)
Name: NF1594-INSERTION-3
Description: NF1594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1594-INSERTION-3 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0076 (2 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 923; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 923; E-Value: 0
Query Start/End: Original strand, 8 - 1009
Target Start/End: Original strand, 29568267 - 29569277
Alignment:
| Q |
8 |
ccctcggctacactattgaatacgttcgtccaaacggtggaatcaagaagttcagatcagctgcttactccaacgtaagttctaagattaaatgattccg |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29568267 |
ccctcggctacactattgaatacgttcgtccaaacggtggaatcaagaagttcagatcagctgcttactccaacgtaagttctaagattaaatgattccg |
29568366 |
T |
|
| Q |
108 |
attctggatttgttggaaactaatcttatttgattatggacttgtgctaatacatgtatttgttaattatgtgcagtgtgctaggaagccatcctgatct |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29568367 |
attctggatttgttggaaactaatcttatttgattaatgacttgtgctaatacatgtatttgttaattatgtgcagtgtgctaggaagccatcctgatct |
29568466 |
T |
|
| Q |
208 |
acttttgctcgaaacgtgttttcttagttgcgtttattttcgttagaattttaatcattcagtactcttcttcaaacgacgtctttccagtctctatttt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29568467 |
acttttgctcgaaacgtgttttcttagttgcgtttattttcgttagaattttaatcattcagtactcttcttcaaacgacgtctttccagtctctatttt |
29568566 |
T |
|
| Q |
308 |
tgcaattgtgctgtcgttgttcactgctttcgggttttggtgctgtgcattttctttttctgaaacaatatggccttggcagtttcttcaatcggttttg |
407 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29568567 |
tgcaattgtgctgttgttgttcactgctttcgggttttggtgctgtgcattttctttttctgaaacaatatggccttggcagtttcttcaatcggttttg |
29568666 |
T |
|
| Q |
408 |
aaggctttgaaaagaggctagagatatcatttttcgaaccgggagtatttttggaccctgaaggaaaggatcttagatctctaacaaaatcccagttaga |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29568667 |
aaggctttgaaaagaggctagagatatcatttttcgaaccgggagtatttttggaccctgaaggaaaggatcttagatctctaacaaaatcccagttaga |
29568766 |
T |
|
| Q |
508 |
cgagattctagcacctgcggaatgcatcattgtttcctcactgtcagatgataaggttgactcttatgttctctctgaatccagcctttttgtttatcca |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29568767 |
cgagattctagcacctgcggaatgcatcattgtttcctcactgtcaaatgataaggttgactcttatgttctctctgaatccagcctttttgtttatcca |
29568866 |
T |
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| Q |
608 |
tacaagatcataatcaaaacctgtggtactaccaaattgctgctttcaatcccaccgatattgaagctatccgaggcgcttggactaactgttcgatcgg |
707 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29568867 |
tacaagatcataatcaaaacctgtggtactaccaaattgctgctttcaatcccaccgatattgaagctatccgaggcgcttggactaactgttcgatcgg |
29568966 |
T |
|
| Q |
708 |
taagatacacccgtggaagtttcacttttccaagtgctcagtcctttcctcatcgcagcttctccgaggaagtagcagtccttgatagctactttgcgaa |
807 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29568967 |
taagatacacccgtggaagtttcacttttccaagtgctcagtcctttcctcatcgcagcttctccgaggaagtagcagtccttgatagctactttgcgaa |
29569066 |
T |
|
| Q |
808 |
gcttggaaca-gaagcgtggcttatgttttgggtggctcagacagcacac-aaaatggcatgtttactctgctgctgcgaagtctgtgagcttattcgac |
905 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29569067 |
gcttggaacaggaagcgtggcttatgttttgggtggctcagacagcacacaaaaatggcatgtttactctgctgctgcgaagtctgtgagcttattcgac |
29569166 |
T |
|
| Q |
906 |
tcagtttacactctggagatgtgcatgactggg-tagac-aagag-aagcatcgg-tttctac-aagaacagtctag-tcagcattcctgatgactgcg- |
998 |
Q |
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||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| ||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
29569167 |
tcagtttacactctggagatgtgcatgactgggttagacaaagagaaagcatcggttttctacaaagaacagtctagttcagcattcctgatgactgcga |
29569266 |
T |
|
| Q |
999 |
attccggtatc |
1009 |
Q |
| |
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||||||||||| |
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| T |
29569267 |
attccggtatc |
29569277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 378 - 672
Target Start/End: Original strand, 4165 - 4459
Alignment:
| Q |
378 |
tggccttggcagtttcttcaatcggttttgaaggctttgaaaagaggctagagatatcatttttcgaaccgggagtatttttggaccctgaaggaaagga |
477 |
Q |
| |
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||||| ||||||||||| |||| ||||| ||||| |||||||||||| | || || || |||| ||| || ||| | |||| |||||| | || | || |
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| T |
4165 |
tggccatggcagtttctgcaattggtttcgaaggatttgaaaagaggttggaaatttccttttccgatcctggacttttttctgaccctcacgggagggg |
4264 |
T |
|
| Q |
478 |
tcttagatctctaacaaaatcccagttagacgagattctagcacctgcggaatgcatcattgtttcctcactgtcagatgataaggttgactcttatgtt |
577 |
Q |
| |
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| | |||||||| ||||||||||| | || |||||||| ||||| || || |||| ||||||||| || | || |||| | |||||||| |||||| |
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| T |
4265 |
tttaagatctctcacaaaatcccaacttgatgagattcttgcaccagctgagtgcaccattgtttcttccttagcaaatgacgatgttgactcctatgtt |
4364 |
T |
|
| Q |
578 |
ctctctgaatccagcctttttgtttatccatacaagatcataatcaaaacctgtggtactaccaaattgctgctttcaatcccaccgatattgaa |
672 |
Q |
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|| ||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||| |
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| T |
4365 |
ctgtctgagtccagcctttttgtttatgcctacaagatcataatcaaaacctgtggtactaccaaattactgcttgcaatcccacccatattgaa |
4459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 3784 - 3863
Alignment:
| Q |
8 |
ccctcggctacactattgaatacgttcgtccaaacggtggaatcaagaagttcagatcagctgcttactccaacgtaagt |
87 |
Q |
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||||||| |||| |||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3784 |
ccctcggatacagcattgaagacattcgtcctaacggtggaatcaagaagttcagatcagctgcttactccaacgtaagt |
3863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 445
Target Start/End: Complemental strand, 363578 - 363531
Alignment:
| Q |
398 |
atcggttttgaaggctttgaaaagaggctagagatatcatttttcgaa |
445 |
Q |
| |
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|||||||||||||||| |||||||||||| |||||| | ||||||||| |
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| T |
363578 |
atcggttttgaaggctatgaaaagaggcttgagataacttttttcgaa |
363531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 445
Target Start/End: Complemental strand, 5903445 - 5903398
Alignment:
| Q |
398 |
atcggttttgaaggctttgaaaagaggctagagatatcatttttcgaa |
445 |
Q |
| |
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|||||||||||||||| |||||||||||| |||||| | ||||||||| |
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| T |
5903445 |
atcggttttgaaggctatgaaaagaggcttgagataacttttttcgaa |
5903398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 445
Target Start/End: Original strand, 5911758 - 5911805
Alignment:
| Q |
398 |
atcggttttgaaggctttgaaaagaggctagagatatcatttttcgaa |
445 |
Q |
| |
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|||||||||||||||| |||||||||||| |||||| | ||||||||| |
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| T |
5911758 |
atcggttttgaaggctatgaaaagaggcttgagataacttttttcgaa |
5911805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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