View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1594-INSERTION-5 (Length: 945)
Name: NF1594-INSERTION-5
Description: NF1594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1594-INSERTION-5 |
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Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 176 - 800
Target Start/End: Complemental strand, 22579348 - 22578722
Alignment:
| Q |
176 |
ttaattgcatacatttagagtttgttcctctagttcatcaaaattaatgatttataaatttaaaaagttttagtttaatgtgtggtctcnnnnnnnnnnn |
275 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
22579348 |
ttaattgcatacatttagagtttgttcctctagttcaaccaaattaatgatttataaatttaaaaagttttagtctaat--gtggtctccttttcttttt |
22579251 |
T |
|
| Q |
276 |
nnnnnnnnnnnattcctctagttcaaccattttaaaagtttatctcacttttcctaatac---atttttgtttccgataattctatatagaaatgttagt |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||| || |
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| T |
22579250 |
ctttt------attcctctagttcaaccattttaaaagtttatctcacttttcctaatactacatttttgtttccgataattctatatggagatgtttgt |
22579157 |
T |
|
| Q |
373 |
attgaccactaagcagtccagaagcccaatgttatagcccaagccaattatttcattgctattacttttctcgccctattagtttctcacgttccctatt |
472 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||| | |||| |
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| T |
22579156 |
attggccactaagcagtccagaagtccaatgttatagcccgagccaattatttaaatgctattacttttctcgccctattagtttctcacgtgctatatt |
22579057 |
T |
|
| Q |
473 |
ttctttcctaatttaccctttgttcgaaaaatataatccatactacatttcagcatatataatccgaaccatgtg-------tcatgcctatccaaagca |
565 |
Q |
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|||||| ||||||||| |||||||||||||||||||| || |||||||||| | ||||||||||||||||||||| |||||||||| ||||||| |
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| T |
22579056 |
ttcttttctaatttactctttgttcgaaaaatataattcaaactacatttcggtatatataatccgaaccatgtgtagttgctcatgcctatacaaagca |
22578957 |
T |
|
| Q |
566 |
tgtaaatatacagttcggattgtatttaccaaaacgttgcaaaatcgttcggcnnnnnnnntaccaaaacgtgtcaaaccccactaaagaccatgtttag |
665 |
Q |
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| T |
22578956 |
tgtaaatatacagttcggattgtatttaccaaaactttgcaaaattgttcggcaaaaaaaa-accaaaatgtgtcaaaccccactaaagaccatgtttaa |
22578858 |
T |
|
| Q |
666 |
tagcagattttaatgttaaaattgacacagtttggattatattttcccaacatttatgacatagtcagattatattagctgaactttatcagcgcactga |
765 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22578857 |
tagcagattttaatgttaaaattgacacagtttggattatattttcccaacctttatgacatagtcagattatattagctgaactttatcaacgcactga |
22578758 |
T |
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| Q |
766 |
aac-aaatttgtcacaggtaaattcggctgaaaacc |
800 |
Q |
| |
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||| |||||||||||| | | |||| |||||||||| |
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| T |
22578757 |
aacaaaatttgtcacaagcatattcagctgaaaacc |
22578722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 10 - 178
Target Start/End: Complemental strand, 22579680 - 22579509
Alignment:
| Q |
10 |
agaaatatcatttccatctccaatctctatctacaaccaacactaggataaactttgaattacaaattgttctccgaacaaaactagacctattt---at |
106 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||| || |
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| T |
22579680 |
agaaatatcatttccatctccaatctccatctacaaccaacactaggataaactttgaattacaaattgttctccaaacaaaactacacttatttatgat |
22579581 |
T |
|
| Q |
107 |
cccactttcattttttatgtcactatgatatgatatctccaatactcacatttatatatttgatgagattta |
178 |
Q |
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| T |
22579580 |
ctcactttcattttttatgtcactatgatatgatatctccaatactcacatttatatatttgatgagattta |
22579509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 822 - 942
Target Start/End: Complemental strand, 22578694 - 22578574
Alignment:
| Q |
822 |
aattggcgaatcgatatta-tgagagcatatgaaacacaacacaaacacatattattcatacaaag-ttaataatacatgcataaaaaac-aagactaat |
918 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
22578694 |
aattggcgaatcgatattaatgagagcatatgaaacacaa-----acacaaattatccatacaaaggttaataatacatgcataaaaaacaaagactaat |
22578600 |
T |
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| Q |
919 |
-atgtcac-aatattcaaacgttaca |
942 |
Q |
| |
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||||||| |||||||||| |||||| |
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| T |
22578599 |
aatgtcacaaatattcaaaggttaca |
22578574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 481 - 536
Target Start/End: Complemental strand, 1688726 - 1688671
Alignment:
| Q |
481 |
taatttaccctttgttcgaaaaatataatccatactacatttcagcatatataatc |
536 |
Q |
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||||||||| | |||||||||||||||| | ||||||||||||||||||||||| |
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| T |
1688726 |
taatttaccgtctgttcgaaaaatataactcgaactacatttcagcatatataatc |
1688671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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