View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1594-INSERTION-8 (Length: 862)
Name: NF1594-INSERTION-8
Description: NF1594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1594-INSERTION-8 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 21 - 335
Target Start/End: Original strand, 42330404 - 42330718
Alignment:
| Q |
21 |
tattataaaaggcaaaaattccaggaaatgcttttgtttcttgaacgtaccacatttacaatgttctttagcatataaggaaaaatgcttagtaccatgg |
120 |
Q |
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| T |
42330404 |
tattataaaaggtaaaaattccaggaaatgcttttgtttcttgaacgtaccacatttacaatgttctttagcatataaggaaaaatgtttagtaccatgg |
42330503 |
T |
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| Q |
121 |
acatggagacatttttgttgaatgacttgcgtagagaaccttccttaattgcataaacccaaaattcaatttcttgtttatgtggtgtgattcttctttc |
220 |
Q |
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| T |
42330504 |
acatggagacatttttgttgaatgacttgcgtggagaaccttccttaattgcataaactcaaaattcaattccttgtttatgtggtgtgattcttctttc |
42330603 |
T |
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| Q |
221 |
tttccttcataatgtctttattttaatgttgttggaagaatatcttgaggaacagggcgcataaattaaaggaattccaccccaccacaaatgttcaaga |
320 |
Q |
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| T |
42330604 |
tttccttcatagtgtctttattttaattttgttggaagaatatcttgaggaacagggcgcataaattaaaggaattccaccccaccacaaatgttcaaga |
42330703 |
T |
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| Q |
321 |
ctaaatacaaactta |
335 |
Q |
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| T |
42330704 |
ctaaatacatactta |
42330718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 378 - 505
Target Start/End: Original strand, 42330719 - 42330846
Alignment:
| Q |
378 |
tgtcatttcagaataaaactaagattcaaaccaagttccaagattggtaacaaaacaagaaggtggagctctccttttactataaaccattctgctcctc |
477 |
Q |
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| T |
42330719 |
tgtcatttcagaataaaactaagattcaaaccaagttccaagattggtaacaaaacaagaaggtggagctctccttttactataaaccattctgctcctc |
42330818 |
T |
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| Q |
478 |
attcctttgcttaaaataaaatgttact |
505 |
Q |
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| T |
42330819 |
attcctttgcataaaataaaatgttact |
42330846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 664 - 845
Target Start/End: Original strand, 42331690 - 42331890
Alignment:
| Q |
664 |
gcaaaccgagcaaaatggtactctaatctaata---caaggtaaagggtagaaatagagaaaattacaat-aaatggtgcaaatgaaaac-aaatcaaaa |
758 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||| |
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| T |
42331690 |
gcaaaccgagcaaaatggtactctaatctaatagtacaaggtaaagggtagaaatagagaaaattacaataaaacggtgcaaatgaaaacaaaatcaaaa |
42331789 |
T |
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| Q |
759 |
tacaac-ggcaccgaaaatcgggttc-agagtgaaagaaa-ratcctcac----------acg-attagttatcatcttgtgcaaagtaaacgaagaccg |
844 |
Q |
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|||||| ||||||||||||||||||| |||| |||||||| |||||||| ||| ||||||||||||||||| |||||||||||||||||| |
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| T |
42331790 |
tacaacaggcaccgaaaatcgggttcaagagagaaagaaagaatcctcacaattacctcaacgaattagttatcatcttgtacaaagtaaacgaagaccg |
42331889 |
T |
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| Q |
845 |
c |
845 |
Q |
| |
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| |
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| T |
42331890 |
c |
42331890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 505 - 590
Target Start/End: Original strand, 42331596 - 42331681
Alignment:
| Q |
505 |
tactatgagttatggaaggagtatgtttttatgttccttttgtattcttttgttgagaaagggagttgcgtgtgtgcatgcatatg |
590 |
Q |
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| T |
42331596 |
tactatgagttatggaaggagtatgcttttatgttccttttgtattcttttgttgagaaagggagttgcgtgtgtgcatgcatatg |
42331681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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