View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1594-Insertion-10 (Length: 768)
Name: NF1594-Insertion-10
Description: NF1594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1594-Insertion-10 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-135; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 8 - 313
Target Start/End: Original strand, 38708225 - 38708529
Alignment:
| Q |
8 |
ttatagtcttttacttatcataaatttaaaatatgcatctcaggtatcactgattgtgaaatgatttttcaggtatacagtcattatcatgacctccaac |
107 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38708225 |
ttatagtcttttacttatcgtaaatttaaaatatgcatctcaggtgtcactgattgtgaaatgatttttcaggtatacagtcattatcatgacctcaaac |
38708324 |
T |
|
| Q |
108 |
cttggtgccgagcatctcataagtggactttcaggaaaatgcaccatgcaagttgctagtgatcgagtaatgcaggaagtnnnnnnnncatttcaggcca |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||| |
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| T |
38708325 |
cttggtgccgagcatctcataagtggactttcaggaaaatgcaccatgcaagttgctcgtgatcgagtaatgcaggaagt-aaaaaaacatttcagacca |
38708423 |
T |
|
| Q |
208 |
gaattgttgaattcactggatgaagttgttgtatttgatcatctatctcacgagtaattgaggaaggtcgcaaggttgaaaatgaaggatgtagctagtc |
307 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38708424 |
gaattgttgaattcgctggatgaagttgttgtatttgatcatctatctcatgagtaattgaggaaggttgcaaggttgaaaatgaaggatgtagctagtc |
38708523 |
T |
|
| Q |
308 |
gtcttg |
313 |
Q |
| |
|
|||||| |
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|
| T |
38708524 |
gtcttg |
38708529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 310 - 593
Target Start/End: Original strand, 38708676 - 38708945
Alignment:
| Q |
310 |
cttgaagccctcgagaatacaccatatttttacttttaatcccagtaaaaagtannnnnnnnnnnnnnnnnattcattgcaaatacatcatattttactt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38708676 |
cttgaagccctcgagaatacaccatatttttacttttaatcccagtaaaaagtattttttgtttttgttttattcattgcaaatacatcatatt------ |
38708769 |
T |
|
| Q |
410 |
taggtcctacgtgttttgtttcagtcattgcaaacttgttcattttgaaattggtccttgaaaatatatcatattttgctttaggcctgataatattcat |
509 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38708770 |
--------acgtgttttgtttcggtcattgcaaacttgttcattttgaaattggtccttgaaaatatatcatattttgctttaggcctgataatattcat |
38708861 |
T |
|
| Q |
510 |
tttaaccttggaggggctaaaatcaaatattctacatattctggcctacaactgcgagtaccaaataaaacattttacaaagac |
593 |
Q |
| |
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||||||| ||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38708862 |
tttaaccctggagaggctaaaatcgaatattctacatattctggcctacaactgcaagtaccaaataaaacattttacaaagac |
38708945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 84 - 313
Target Start/End: Original strand, 10046696 - 10046924
Alignment:
| Q |
84 |
acagtcattatcatgacctccaaccttggtgccgagcatctcataagtggactttcaggaaaatgcaccatgcaagttgctagtgatcgagtaatgcagg |
183 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||| || ||||||||||||||| | || |||||||||| || |
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|
| T |
10046696 |
acagtcattatcatgacctcaaacctcggcgccgatcatctcataagtggactttcaggaaattgtaccatgcaagttgctcgcgaccgagtaatgctgg |
10046795 |
T |
|
| Q |
184 |
aagtnnnnnnnncatttcaggccagaattgttgaattcactggatgaagttgttgtatttgatcatctatctcacgagtaattgaggaaggtcgcaaggt |
283 |
Q |
| |
|
|||| |||||| ||||||||||||||||| || || |||||||||||||| |||| |||||||||||| ||||||||||||| ||||||| |
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|
| T |
10046796 |
aagtaaaaaag-catttccggccagaattgttgaataggctagacgaagttgttgtattcgatccactatctcacgagcaattgaggaaggttgcaaggt |
10046894 |
T |
|
| Q |
284 |
tgaaaatgaaggatgtagctagtcgtcttg |
313 |
Q |
| |
|
|| ||||||||||||| ||||||||||||| |
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| T |
10046895 |
tgcaaatgaaggatgttgctagtcgtcttg |
10046924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 657 - 760
Target Start/End: Original strand, 38709008 - 38709111
Alignment:
| Q |
657 |
atactaactatgttatattattgtgtaggtgtatggtgctagaccaatta-aaagtggcttgagaagaatgtggtgagtgagctgggctatgatgtatat |
755 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
38709008 |
atactaactatgttatattattgtgtaggtgtatggtgctagaccaattagaaggtggcttgagaagaatgtggtgagtgagct-ggctatgatgtatat |
38709106 |
T |
|
| Q |
756 |
aaagg |
760 |
Q |
| |
|
||||| |
|
|
| T |
38709107 |
aaagg |
38709111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 659 - 732
Target Start/End: Original strand, 10047050 - 10047121
Alignment:
| Q |
659 |
actaactatgttatattattgtgtaggtgtatggtgctagaccaattaaaagtggcttgagaagaatgtggtga |
732 |
Q |
| |
|
|||||||||||| |||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
10047050 |
actaactatgttttattgttgtgtaggtgtacggtgctagaccaatt--tggtggcttgagaagaatgtggtga |
10047121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 2e-54; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 84 - 313
Target Start/End: Complemental strand, 740182 - 739954
Alignment:
| Q |
84 |
acagtcattatcatgacctccaaccttggtgccgagcatctcataagtggactttcaggaaaatgcaccatgcaagttgctagtgatcgagtaatgcagg |
183 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||| |||||| |||||||| | ||| ||||||||||| |
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|
| T |
740182 |
acagtcattatcatgacctcaaaccttggttccgagcatctcctaagtggactttcaggaaaatgtaccatggaagttgctcgcgataaagtaatgcagg |
740083 |
T |
|
| Q |
184 |
aagtnnnnnnnncatttcaggccagaattgttgaattcactggatgaagttgttgtatttgatcatctatctcacgagtaattgaggaaggtcgcaaggt |
283 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||| |||||||||||||| || | ||| |||||| || ||||||||||||| |||||| |
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|
| T |
740082 |
aagt-gagaaatcatttcaggccagaattgttgaatcggctggacgaagttgttgtattcgaccctctttctcacaagcaattgaggaaggttgcaagga |
739984 |
T |
|
| Q |
284 |
tgaaaatgaaggatgtagctagtcgtcttg |
313 |
Q |
| |
|
|| |||||||||||||||||| |||||||| |
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|
| T |
739983 |
tgcaaatgaaggatgtagctaatcgtcttg |
739954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 87 - 313
Target Start/End: Complemental strand, 42449402 - 42449177
Alignment:
| Q |
87 |
gtcattatcatgacctccaaccttggtgccgagcatctcataagtggactttcaggaaaatgcaccatgcaagttgctagtgatcgagtaatgcaggaag |
186 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| ||||| ||||| ||| ||||||||||||||||||| |
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|
| T |
42449402 |
gtcattatcatgacctcgaaccttggtgccgatcatctcttaagtggactttcaggaaaatgtaccatccaagtagctcacgatcgagtaatgcaggaag |
42449303 |
T |
|
| Q |
187 |
tnnnnnnnncatttcaggccagaattgttgaattcactggatgaagttgttgtatttgatcatctatctcacgagtaattgaggaaggtcgcaaggttga |
286 |
Q |
| |
|
| |||||| || ||||||||||||| ||| ||||||| ||||| ||| ||| ||| || || ||||||||||||| ||||||||| |
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|
| T |
42449302 |
t-cagtgagcatttcctgctagaattgttgaatcagctgaccaaagttgtagtattcaatcctctttcttaccagcaattgaggaaggttgcaaggttgc |
42449204 |
T |
|
| Q |
287 |
aaatgaaggatgtagctagtcgtcttg |
313 |
Q |
| |
|
|||| |||||||||| || |||||||| |
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|
| T |
42449203 |
aaatcaaggatgtaggtaatcgtcttg |
42449177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 91 - 187
Target Start/End: Complemental strand, 742268 - 742172
Alignment:
| Q |
91 |
ttatcatgacctccaaccttggtgccgagcatctcataagtggactttcaggaaaatgcaccatgcaagttgctagtgatcgagtaatgcaggaagt |
187 |
Q |
| |
|
||||||||||||| |||||||| || || |||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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|
| T |
742268 |
ttatcatgacctcgaaccttggcgctgatcatctccaaagtggactttcaggaaaatgtaccatgcaagttgctcacgatcgagtaatgcaggaagt |
742172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 677 - 732
Target Start/End: Complemental strand, 741882 - 741826
Alignment:
| Q |
677 |
ttgtgtaggtgtatggtgctagaccaatta-aaagtggcttgagaagaatgtggtga |
732 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||| || ||||||| |
|
|
| T |
741882 |
ttgtgtaggtgtatggtgctagaccaattagaaggtggcttgagaaaaaggtggtga |
741826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 230 - 309
Target Start/End: Complemental strand, 742130 - 742051
Alignment:
| Q |
230 |
aagttgttgtatttgatcatctatctcacgagtaattgaggaaggtcgcaaggttgaaaatgaaggatgtagctagtcgt |
309 |
Q |
| |
|
||||||| ||||| ||| ||| |||||| || ||||||||||||| ||||||||| |||| ||||||||||||| |||| |
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|
| T |
742130 |
aagttgtagtattcaatcctctttctcaccagcaattgaggaaggttgcaaggttgcaaatcaaggatgtagctaatcgt |
742051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 680 - 732
Target Start/End: Complemental strand, 42449025 - 42448972
Alignment:
| Q |
680 |
tgtaggtgtatggtgctagaccaattaaaag-tggcttgagaagaatgtggtga |
732 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||| || ||||||| |
|
|
| T |
42449025 |
tgtaggtgtatggtgctagaccaattagaagctggcttgagaaaaaggtggtga |
42448972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 724
Target Start/End: Complemental strand, 739747 - 739702
Alignment:
| Q |
680 |
tgtaggtgtatggtgctagaccaatta-aaagtggcttgagaagaa |
724 |
Q |
| |
|
|||||||||||||||||||| |||||| || ||||||||||||||| |
|
|
| T |
739747 |
tgtaggtgtatggtgctagatcaattagaaggtggcttgagaagaa |
739702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 8e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 93 - 313
Target Start/End: Original strand, 45468366 - 45468585
Alignment:
| Q |
93 |
atcatgacctccaaccttggtgccgagcatctcataagtggactttcaggaaaatgcaccatgcaagttgctagtgatcgagtaatgcaggaagtnnnnn |
192 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| | |||||||||||||||||||| |||||||||| |||| | |||||||| ||||||||||| |
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|
| T |
45468366 |
atcatgacctctaaccttggtgctgagcatctcttgagtggactttcaggaaaatgtaccatgcaagctgctcgcgatcgagtgatgcaggaagtaagaa |
45468465 |
T |
|
| Q |
193 |
nnncatttcaggccagaattgttgaattcactggatgaagttgttgtatttgatcatctatctcacgagtaattgaggaaggtcgcaaggttgaaaatga |
292 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||| || ||| ||||||| ||||| ||||||||| |||||| |
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|
| T |
45468466 |
gg-catttcaggccagaattgttgaaccgactggacgaagttgttgtatttgatcctctatcacatgagcaattgagaaaggttgcaaggttgcaaatga |
45468564 |
T |
|
| Q |
293 |
aggatgtagctagtcgtcttg |
313 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
45468565 |
aggatgtggctagtcgtcttg |
45468585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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