View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1594-Insertion-11 (Length: 776)
Name: NF1594-Insertion-11
Description: NF1594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1594-Insertion-11 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-169; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 390 - 771
Target Start/End: Complemental strand, 43431377 - 43430994
Alignment:
| Q |
390 |
atacaaagacaaaattacataaaacagaatgaaagctatggccataaaataactctgagtttccataattgtcaaatcagtatcttcaaaataggattgt |
489 |
Q |
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| T |
43431377 |
atacaaagacaaaattacataaaatagaatgaaagctatggccataaaataactctgagtt-ccataattgtcaaatcagtatcttcaaaatgtgattgt |
43431279 |
T |
|
| Q |
490 |
cnnnnnnnnnnnnaagatattaacctatccaatccttcttatgtactagtcggtgcacaacactaaattttttcaacggaaacatacaaaggcataactt |
589 |
Q |
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| T |
43431278 |
cttttttctttttaagatattaacctatccaatccttcttatgtactagtcggtgcacaacactaaattttttcaacggaaacatacaaaagcataactt |
43431179 |
T |
|
| Q |
590 |
gattttgatgttcacaaagcttaattttattaccttaacaaccttttactactttttactataaagatgaaacatttctttaactacctagcacgtagta |
689 |
Q |
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| T |
43431178 |
gattttgatgttcacaaagcttaattttattaccttaacaaccttttactactttttactataaagatgaaacatttctttaactacctagcacgtagta |
43431079 |
T |
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| Q |
690 |
tttccttagttaattcaatcttaccaaattaagtaga--gaaaatatctaatcaaagataaaag-aaagtgggtcccatgtcaaa |
771 |
Q |
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| T |
43431078 |
tttccttagttaattcaatcttaccaaattaagtagaagaaaaatatctaatcaaagataaaagaaaagtgggtcccatgtcaaa |
43430994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 50 - 391
Target Start/End: Complemental strand, 43431764 - 43431412
Alignment:
| Q |
50 |
cttcaactacatatacatttaattgtctgaaaaccttgacaatgtgatcgtatggtgcaacttcgacacctactaccatcatgtctagtatgagttctga |
149 |
Q |
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| T |
43431764 |
cttcaactacatatacattcaattgtctgaaaaccttgacaatgtgatcgtatggtgcaacttcgacacctac---catcatgtctagtgtgagttctga |
43431668 |
T |
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| Q |
150 |
gttcaatccctt--------------taattacatctttaatccagctctgattacttatcaaattaaatgagattaaatctcactttcaaaaactagct |
235 |
Q |
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| T |
43431667 |
gttcaatctcttgagtttaatctctttaattacatctttaatccaactctgattacttatcaaattaaatgagattaaatctcactttcaaaaactagct |
43431568 |
T |
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| Q |
236 |
taaacgatgataatgaccaaacacacataagtcttcaatataaattcaatagttttgatattgtcacatggcttagtttcaagacttttattttcctgtt |
335 |
Q |
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| T |
43431567 |
caaataatgatagtgaccaaacacacataagtcttcaatataaattcaatagttttgatattgtcacatggcttagttataagacttttattttcctgtt |
43431468 |
T |
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| Q |
336 |
aattattttcaaaaaagtcattcatttgctaaacatgacgtaaacattatgttaat |
391 |
Q |
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| T |
43431467 |
aattattttcaaaaaagtcattcatttgctaaacatgacgtaaacattatgttaat |
43431412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 43431867 - 43431824
Alignment:
| Q |
10 |
aggttggttgagaggtgttggtttgggactttagattgtgcttc |
53 |
Q |
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| T |
43431867 |
aggttggttgagaggtgttggtttgggactttagagtgtgcttc |
43431824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 391 - 446
Target Start/End: Complemental strand, 23849448 - 23849394
Alignment:
| Q |
391 |
tacaaagacaaaattacataaaacagaatgaaagctatggccataaaataactctg |
446 |
Q |
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|||||||||| | ||||||||||||||||| || ||||| |||||||||||||||| |
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| T |
23849448 |
tacaaagacatagttacataaaacagaatggaa-ctatgaccataaaataactctg |
23849394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 392 - 443
Target Start/End: Original strand, 45401403 - 45401454
Alignment:
| Q |
392 |
acaaagacaaaattacataaaacagaatgaaagctatggccataaaataact |
443 |
Q |
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||||||||| ||||| ||||||||||||||||| | || ||||||||||||| |
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| T |
45401403 |
acaaagacataattatataaaacagaatgaaagttgtgaccataaaataact |
45401454 |
T |
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