View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1594-Insertion-12 (Length: 750)
Name: NF1594-Insertion-12
Description: NF1594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1594-Insertion-12 |
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Alignment Details
Target: chr4 (Bit Score: 697; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 9 - 748
Target Start/End: Complemental strand, 35894465 - 35893726
Alignment:
| Q |
9 |
tacttacaactaactgaaattgaattgctctgtactttgtcaatatgctaaatatataggttggagtgtcaaagcaattgtgagctggatattatctgaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35894465 |
tacttacaactaactgaaattgaattgctctgtactttgtcaatatgctaaatatataggttggagtgtcaaagcaattgtgagctggatattatctgaa |
35894366 |
T |
|
| Q |
109 |
tgtttagggggtgacaatatctctattctagctgaagaggaggttcagactctctccaacactaatgcatctgaactgctagaaactgtagtaaaaattg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35894365 |
tgtttagggggtgacaatatctctattctagctgaagaggaggttcagactctctccaacactaatgcatctgaactgctagaaactgtagtaaaaattg |
35894266 |
T |
|
| Q |
209 |
tgaatgaatgtctatctgaagcatctttatttggagctgaagcaccaaaatcagctcttagaacttcagaggttcttgaaatcattagtcactgcaactc |
308 |
Q |
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||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35894265 |
tgaatgattgtctatctgaagcacctttatttggagctgaagcaccaaaatcagctcttggaacttcagaggttcttgaaatcattagtcactgcaactc |
35894166 |
T |
|
| Q |
309 |
agttgggggtcattccggaagattttgggcactaagtcctcttgatggtaaattgggatttgtaaatggtgatcaatatgctgtagctttatcacttgta |
408 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35894165 |
agttgggggtcattcgggaagattttgggcactaagtcctcttgatggtaaattgggatttgtaaatggtgatcaatatgctgtagctttatcactcgta |
35894066 |
T |
|
| Q |
409 |
gaggatggagaagtggtggttggtgttcttgggtgtcctaactaccctatgagaaaggactggcttggttatcagcaaagttatcataggattatgtcca |
508 |
Q |
| |
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| T |
35894065 |
gaggatggagaagtggtggttggtgttcttgggtgtcctaactaccctatgagaaaggactggcttggttatcagcaaagttatcataggatcatgtcca |
35893966 |
T |
|
| Q |
509 |
agttgattcctccaacatctaaaacttggaatagaggttgtgtaatttatgctaaaaaggatagtggcaaggcttggatccaaccactcatccatcatgc |
608 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35893965 |
agttgattcctccaacatctgaaacttggaatagaggttgtgtaatttatgctaaaaaggatagtggcaaggcttggatccaaccactcatccatcatgc |
35893866 |
T |
|
| Q |
609 |
caataagaagtttgtgtggccaaaccatgcaaaactagtttctttgtcttctgttgacaacctaggattggccactttgtg-caaacagtttgaggaggc |
707 |
Q |
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| T |
35893865 |
caataagaagtttgtgtggccaaaccatgcaaaactagtttctttgtcttctgttgacaacctaggattggccactttgtgccaaacag-ttgaggaggc |
35893767 |
T |
|
| Q |
708 |
taattcaagtcactcctttactgatggactggctcatagtg |
748 |
Q |
| |
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| T |
35893766 |
taattcaagtcactcctttactgatggactggctcatagtg |
35893726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 9e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 64 - 640
Target Start/End: Original strand, 3111615 - 3112188
Alignment:
| Q |
64 |
ataggttggagtgtcaaagcaattgtgagctggatattatctgaatgtttagggggtgacaatatctctattctagctgaagaggaggttcagactctct |
163 |
Q |
| |
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|||| |||||||||| ||||| |||||||||||||||||||||| ||| |||| | || |||||||| ||| |||||||||| || ||||| ||||||| |
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| T |
3111615 |
atagattggagtgtccaagcagttgtgagctggatattatctgagtgtctaggaagcgaaaatatctcaattgtagctgaagaagatgttcaaactctct |
3111714 |
T |
|
| Q |
164 |
ccaacactaatgcatctgaactgctagaaactgtagtaaaaattgtgaatgaatgtctatctgaagcatctttatttggagctgaagcaccaaaatcagc |
263 |
Q |
| |
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|||| |||||||||||||||| |||| |||| || |||| ||||||||| || ||| ||||||| || |||||| | | | ||||||||| | |
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| T |
3111715 |
ccaaatctaatgcatctgaactattagactctgtggttaaaactgtgaatgattgcctagctgaagcgcctcgatttggtgttcagaagccaaaatcacc |
3111814 |
T |
|
| Q |
264 |
tcttagaacttcagaggttcttgaaatcattagtcactgcaactcagttgggggtcattccggaagattttgggcactaagtcctcttgatggtaaattg |
363 |
Q |
| |
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||| ||| |||||| ||||| || || || |||| |||||||||| || |||| || ||||||||||||| |||| |||| ||||||| | | | |
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| T |
3111815 |
acttggaaattcagaagttctcgatattataagtcgctgcaactcaaccggtggtccatctggaagattttgggtactagatcctgttgatggcacactc |
3111914 |
T |
|
| Q |
364 |
ggatttgtaaatggtgatcaatatgctgtagctttatcacttgtagaggatggagaagtggtggttggtgttcttgggtgtcctaactaccctatgagaa |
463 |
Q |
| |
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|| ||||| ||| |||||||||||||||||| || | || ||||||||||||||||| ||| ||||||||||||| ||||| || ||||||||| | | |
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| T |
3111915 |
gggtttgttcgtggcgatcaatatgctgtagctctagcgctcgtagaggatggagaagtagtgcttggtgttcttggctgtccaaattaccctatgcgga |
3112014 |
T |
|
| Q |
464 |
aggactggcttggttatcagcaaagttatcataggattatgtccaagttgattcctccaacatctaaaacttggaatagaggttgtgtaatttatgctaa |
563 |
Q |
| |
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|||| ||| | ||||||| || | |||||||||||| | || ||||||| ||||||||| ||| ||| |||||| | ||||||||| | |||||||| |
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| T |
3112015 |
aggaatggttaagttatcaacaccggtatcataggattgtatcgaagttgactcctccaacttctgaaagttggaacaaaggttgtgtgctatatgctaa |
3112114 |
T |
|
| Q |
564 |
aaaggatagtggcaaggcttggatccaaccactcatccatcatgccaataagaagtttgtgtggccaaaccatgcaa |
640 |
Q |
| |
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||||| || || ||||||||||| |||||| | | |||| ||||||| ||||||||||||||||||||||| |
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| T |
3112115 |
aaagggtacaggaaaggcttggatgcaacca---ttgctacatgtgaataagatgtttgtgtggccaaaccatgcaa |
3112188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 230
Target Start/End: Complemental strand, 19058640 - 19058495
Alignment:
| Q |
85 |
attgtgagctggatattatctgaatgtttagggggtgacaatatctctattctagctgaagaggaggttcagactctctccaacactaatgcatctgaac |
184 |
Q |
| |
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||||| ||||||||||||||||| ||| |||| | || |||||| | | | |||||||||| | ||||| ||||||||||| ||||||||||||||| |
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| T |
19058640 |
attgtcagctggatattatctgagtgtctaggaagcgaaaatatcacaactatagctgaagaaaatgttcaaactctctccaaatctaatgcatctgaac |
19058541 |
T |
|
| Q |
185 |
tgctagaaactgtagtaaaaattgtgaatgaatgtctatctgaagc |
230 |
Q |
| |
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| |||| | || || |||||||||||||| || ||| ||||||| |
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| T |
19058540 |
tattagactccgtggttaaaattgtgaatgattgcctaactgaagc |
19058495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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