View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1594-Insertion-13 (Length: 752)

Name: NF1594-Insertion-13
Description: NF1594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1594-Insertion-13
NF1594-Insertion-13
[»] chr1 (2 HSPs)
chr1 (115-752)||(4045496-4046126)
chr1 (23-105)||(4045014-4045089)


Alignment Details
Target: chr1 (Bit Score: 500; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 115 - 752
Target Start/End: Original strand, 4045496 - 4046126
Alignment:
Q  115 attctctattgaaactcaatatcttcaacaacacttatacataaaataatgatcaggaagtcaatgnnnnnnnnnngtttcttgctctgaatgatcatgc 214  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||    
T  4045496 attctctattgaaactcaatttcttcaacaacacttatacataaaataatgatcaggaagtcaatgaaaaaaaaaagtttcttgctctgaatgatcatgc 4045595  T
Q  215 caagaactaagtgcaacattattgttgttcatcttgaaggaatatccatggtgttttactactcatttcacataaatcataatatacttgagatcgatcg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4045596 caagaactaagtgcaacattattgttgttcatcttgaaggaatatccatggtgttttactactcatttcacataaatcataatatacttgagatcgatcg 4045695  T
Q  315 agttgttgcccaacacatggaagtataatggcaggttcctgaactaactaaccaattagtgctcaacacaacccataaacacataaatctaatgcggcga 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||    
T  4045696 agttgttgcccaacacatggaagtataatggcaggttcctgaactaactaaccaattagtgctcaacacaacccataaacac--aaatctaatacggcga 4045793  T
Q  415 taaagcagtttaaagtatagttgctttatgctttatattaatttaaaacattattgattgatgcaaagtaaaatattcatagatggtcaatgttccaacc 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  4045794 taaagcagtttaaagtatagttgctttatgctttatattaatttaaaacattattgcttgatgcaaagtaaaatattcatagat-gtcaatgttccaacc 4045892  T
Q  515 aagcgtttcatgcgtgtttgagttttggcctcaacctttgtttaatagattaaatttaggttttttctttactaagataaaaaatgtgtttgtcaacgaa 614  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  4045893 aagcgtttcatgcgagtttgagttttggcctcaacctttgttgaatagattaaatttaggttttttctttactaacataaaaaatgtgtttgtcaaccaa 4045992  T
Q  615 ccattaattggtcgaaatggtaatgaatttgactccttaaacacgtagtcagaaatttgatttataactcttgcatattnnnnnnnnnnnnttatgttag 714  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||            | || ||||    
T  4045993 ccattaattggtggaaatggtaatgaatttgactccttaaacacgtagtcagaaattcgatttataactcttgcatatt----aaaaaaaatcattttag 4046088  T
Q  715 aatgggtggatctatcatgtgtgtctcacaagttcatc 752  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  4046089 aatgggtggatctatcatgcgtgtctcacaagttcatc 4046126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 4045014 - 4045089
Alignment:
Q  23 ccatttagttttgctatataatcttttataactctattttaatattcaatatcattgtaatattattgaaaatcctaaccatc 105  Q
    ||||||||||||||||||||||       |||| ||||||||||||| || ||||||||||||| ||||||| ||||||||||    
T  4045014 ccatttagttttgctatataat-------aactttattttaatattctatgtcattgtaatattcttgaaaaccctaaccatc 4045089  T

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