View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1594-Insertion-14 (Length: 625)
Name: NF1594-Insertion-14
Description: NF1594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1594-Insertion-14 |
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Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 7 - 573
Target Start/End: Complemental strand, 31988176 - 31987613
Alignment:
| Q |
7 |
aaagcactcacaataggtggtgcatttttcatgtttgctgctatatctgtaatagcttgggnnnnnnnctattttcttgttcctgaaactaaaggtaaga |
106 |
Q |
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| T |
31988176 |
aaagcactcacaataggtggtgcatttttcatgtttgctgctatatctgtaatagcttgggtttttttctattttcttgttcctgaaactaaaggtaaga |
31988077 |
T |
|
| Q |
107 |
ctttggaggagatggagactctttttaccnnnnnnnntaaaagtggtaaaagtgttgccatggaaacatatccaacacaatagaccttagtaagttcaaa |
206 |
Q |
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| T |
31988076 |
ctttggaggagatggagactctttttaccaaaaaaaataaaagtggtaaaagtgttgccatggaaacatatccaacacaatagaccttagtaagttcaaa |
31987977 |
T |
|
| Q |
207 |
aatgtaaaaaatctttacatgacattatgttctttttcctcaaaatattgatctctttttgttgttgtttgtgaagtaatttaatcacttggtgtgttta |
306 |
Q |
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| T |
31987976 |
aatgtaaaaaatctttacatgacattatgttctttttcctcaaaatattgatctctttttgttgttgtttgtgaagtaatttaatcacttggtgtgttta |
31987877 |
T |
|
| Q |
307 |
tcgttttagacttatttcaatattgtttttacttttcttattaacaaaactagattgtctatccatgtgatgtacaaatgatatttttctataggcataa |
406 |
Q |
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| T |
31987876 |
tcgttttagacttatttcaatattgtttttacttttcttattaacaaaactagattgtgtatccatgtgatgtacaaatgatatttttctatgggcataa |
31987777 |
T |
|
| Q |
407 |
ggccaaataaatagtatttgacacacacatataaagaaattatcttcaaaatatttaatcannnnnnnnnnatcaattttccttttataattacaaaaaa |
506 |
Q |
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| T |
31987776 |
gaccaaataaatattatctg--acacacatataaagaaattatcttcaaaatatttaatca-tttttttttatcaattttccttttattattacaaaaaa |
31987680 |
T |
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| Q |
507 |
tacttctttatgtgtgtgcccaaactttgttttttgacaaaatatttatttagtcttgtgaccatat |
573 |
Q |
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| T |
31987679 |
tacttctttatgtgtgtgcccaaactttattttttgacaaaatatttatttagtcttgtgaccatat |
31987613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 549 - 580
Target Start/End: Complemental strand, 29189676 - 29189645
Alignment:
| Q |
549 |
tatttatttagtcttgtgaccatattagaatt |
580 |
Q |
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| T |
29189676 |
tatttatttagtcttgtgaccatattagaatt |
29189645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 402 - 465
Target Start/End: Original strand, 26764511 - 26764575
Alignment:
| Q |
402 |
cataaggccaaataaatagtatttg-acacacacatataaagaaattatcttcaaaatatttaat |
465 |
Q |
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|||||| ||||||||||||| |||| |||||| || || |||| |||||||| |||||||||||| |
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| T |
26764511 |
cataagaccaaataaatagtctttggacacactcacatgaagatattatctttaaaatatttaat |
26764575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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